File List

Here is a list of all files with brief descriptions:

ADRAssembler.hpp	File containing the ADRAssembler class
ADRAssemblerIP.hpp	File containing the IP stabilization for the ADR problem
ADRData.cpp
ADRData.hpp	File containing a class for handling data and parameters for advection-diffusion-reaction problems
ALESolver.cpp
ALESolver.hpp	Classes to hold algorithms for the mesh motion, for instance, involved in a ALE formulation
analyticalSol.hpp
AnalyticalSolution.hpp
AnisotropicMultimechanismMaterialNonLinear.hpp	This file contains the definition for the St. Venant Kirchhoff linear material
ApproximatedInvertibleRowMatrix.cpp
ApproximatedInvertibleRowMatrix.hpp
ArraySimple.hpp	The file contains two classes implementing a wrap up of Standard Library vector class to allow indexing from one
aSIMPLEOperator.cpp
aSIMPLEOperator.hpp	SIMPLE preconditioner for Navier-Stokes equations
Assembly.hpp	File containing method to insert local contributions in the global system
AssemblyElemental.cpp	File containing the procedures for the local assembly of the differential operators
AssemblyElemental.hpp	File containing the procedures for the local assembly of the differential operators
fsi_blocks/solver/AssemblyElementalStructure.cpp	File containing the procedures for the local assembly of the differential operators for the structural problem
structure/fem/AssemblyElementalStructure.cpp	File containing the procedures for the local assembly of the differential operators for the structural problem
fsi_blocks/solver/AssemblyElementalStructure.hpp	File containing the procedures for the local assembly of the differential operators
structure/fem/AssemblyElementalStructure.hpp	File containing the procedures for the local assembly of the differential operators
AssemblyPolicyGeneralizedStokes.hpp
AssemblyPolicyNavierStokesNewton.hpp
AssemblyPolicyNavierStokesPicard.hpp
AssemblyPolicyNavierStokesSemiImplicit.hpp
AssemblyPolicyStokes.hpp
AztecooOperator.cpp	AztecooOperator
AztecooOperator.hpp	AztecooOperator
AztecooOperatorAlgebra.cpp
AztecooOperatorAlgebra.hpp
BareMesh.hpp	Contains utility for importing meshes
mesh/basic_test.cpp	Test the consistency of the mesh data structure
region_marker_id/basic_test.cpp
BCBase.cpp	Classes to handle boundary conditions
BCBase.hpp	Classes to handle boundary conditions
BCDataInterpolator.cpp	File containing a class for interpolating boundary functions from scattered data
BCDataInterpolator.hpp	File containing a class for interpolating boundary functions from scattered data
BCFunction.cpp	File contains BCManageNormal class for handling normal essential boundary conditions
BCFunction.hpp	File contains BCManageNormal class for handling normal essential boundary conditions
BCHandler.cpp	File containing BCHandler class for handling boundary conditions
BCHandler.hpp	File containing BCHandler class for handling boundary conditions
BCIdentifier.cpp	Implementations for BCIdentifier.hpp
BCIdentifier.hpp	Classes for identifiers
BCInterface.hpp	File containing the BCInterface main class
BCInterface0D.hpp	File containing the BCInterface0D class
BCInterface1D.hpp	File containing the BCInterface1D class
BCInterface3D.hpp	File containing the BCInterface3D class
BCInterfaceData.cpp	File containing the BCInterfaceData class
BCInterfaceData.hpp	File containing the BCInterfaceData class
BCInterfaceData0D.cpp	File containing the BCInterfaceData0D class
BCInterfaceData0D.hpp	File containing the BCInterfaceData0D class
BCInterfaceData1D.cpp	File containing the BCInterfaceData1D class
BCInterfaceData1D.hpp	File containing the BCInterfaceData1D class
BCInterfaceData3D.cpp	File containing the BCInterfaceData3D class
BCInterfaceData3D.hpp	File containing the BCInterfaceData3D class
BCInterfaceDefinitions.hpp	File containing the BCInterface definitions
BCInterfaceFactory.hpp	File containing the BCInterfaceFactory class
BCInterfaceFunction.hpp	File containing the BCInterfaceFunction class
BCInterfaceFunctionParser.hpp	File containing the BCInterfaceFunctionParser class
BCInterfaceFunctionParser0D.cpp	File containing the BCInterfaceFunctionParserSolver class
BCInterfaceFunctionParser0D.hpp	File containing the BCInterfaceFunctionParserSolver class
BCInterfaceFunctionParser1D.cpp	File containing the BCInterfaceFunctionParserSolver class
BCInterfaceFunctionParser1D.hpp	File containing the BCInterfaceFunctionParserSolver class
BCInterfaceFunctionParserEmpty3D.cpp	File containing the BCInterfaceFunctionParserSolver class
BCInterfaceFunctionParserEmpty3D.hpp	File containing the BCInterfaceFunctionParserSolver class
BCInterfaceFunctionParserFile.hpp	File containing the BCInterfaceFunctionParserFile class
BCInterfaceFunctionParserFileSolver.hpp	File containing the BCInterfaceFunctionParserFileSolver class
BCInterfaceFunctionParserFluid3D.cpp	File containing the BCInterfaceFunctionParserSolver class
BCInterfaceFunctionParserFluid3D.hpp	File containing the BCInterfaceFunctionParserSolver class
BCInterfaceFunctionParserFSI3D.cpp	File containing the BCInterfaceFunctionParserSolver class
BCInterfaceFunctionParserFSI3D.hpp	File containing the BCInterfaceFunctionParserSolver class
BCInterfaceFunctionParserSolid3D.cpp	File containing the BCInterfaceFunctionParserSolver class
BCInterfaceFunctionParserSolid3D.hpp	File containing the BCInterfaceFunctionParserSolver class
BCInterfaceFunctionParserSolver.hpp	File containing the BCInterfaceFunctionParserSolver class
BCInterfaceFunctionParserSolver0D.cpp	File containing the BCInterfaceFunctionParserSolver class
BCInterfaceFunctionParserSolver0D.hpp	File containing the BCInterfaceFunctionParserSolver class
BCInterfaceFunctionParserSolver1D.cpp	File containing the BCInterfaceFunctionParserSolver class
BCInterfaceFunctionParserSolver1D.hpp	File containing the BCInterfaceFunctionParserSolver class
BCInterfaceFunctionParserSolverFluid3D.cpp	File containing the BCInterfaceFunctionParserSolver class
BCInterfaceFunctionParserSolverFluid3D.hpp	File containing the BCInterfaceFunctionParserSolver class
BCInterfaceFunctionParserSolverFSI3D.cpp	File containing the BCInterfaceFunctionParserSolver class
BCInterfaceFunctionParserSolverFSI3D.hpp	File containing the BCInterfaceFunctionParserSolver class
BCInterfaceFunctionParserSolverSolid3D.cpp	File containing the BCInterfaceFunctionParserSolver class
BCInterfaceFunctionParserSolverSolid3D.hpp	File containing the BCInterfaceFunctionParserSolver class
BCInterfaceFunctionSolverDefined.hpp	File containing the BCInterfaceFunctionSolverDefined class and specializations
BCInterfaceFunctionSolverDefined1D.cpp	File containing the BCInterfaceFunctionSolverDefined class and specializations
BCInterfaceFunctionSolverDefined1D.hpp	File containing the BCInterfaceFunctionSolverDefined class and specializations
BCInterfaceFunctionSolverDefinedFSI3D.cpp	File containing the BCInterfaceFunctionSolverDefined class and specializations
BCInterfaceFunctionSolverDefinedFSI3D.hpp	File containing the BCInterfaceFunctionSolverDefined class and specializations
BCInterfaceFunctionSolverDefinedSolid3D.cpp	File containing the BCInterfaceFunctionSolverDefined class and specializations
BCInterfaceFunctionSolverDefinedSolid3D.hpp	File containing the BCInterfaceFunctionSolverDefined class and specializations
BCInterfaceFunctionUserDefined.hpp	File containing the BCInterfaceFunctionUserDefined class
BCInterfaceFunctionUserDefined0D.cpp	File containing the BCInterfaceFunctionUserDefinedSolver class
BCInterfaceFunctionUserDefined0D.hpp	File containing the BCInterfaceFunctionUserDefinedSolver class
BCInterfaceFunctionUserDefined1D.cpp	File containing the BCInterfaceFunctionUserDefinedSolver class
BCInterfaceFunctionUserDefined1D.hpp	File containing the BCInterfaceFunctionUserDefinedSolver class
BCInterfaceFunctionUserDefinedEmpty3D.cpp	File containing the BCInterfaceFunctionUserDefinedSolver class
BCInterfaceFunctionUserDefinedEmpty3D.hpp	File containing the BCInterfaceFunctionUserDefinedSolver class
BCInterfaceFunctionUserDefinedFluid3D.cpp	File containing the BCInterfaceFunctionUserDefinedSolver class
BCInterfaceFunctionUserDefinedFluid3D.hpp	File containing the BCInterfaceFunctionUserDefinedSolver class
BCInterfaceFunctionUserDefinedFSI3D.cpp	File containing the BCInterfaceFunctionUserDefinedSolver class
BCInterfaceFunctionUserDefinedFSI3D.hpp	File containing the BCInterfaceFunctionUserDefinedSolver class
BCInterfaceFunctionUserDefinedSolid3D.cpp	File containing the BCInterfaceFunctionUserDefinedSolver class
BCInterfaceFunctionUserDefinedSolid3D.hpp	File containing the BCInterfaceFunctionUserDefinedSolver class
BCManage.cpp	Functions for prescribing boundary conditions
BCManage.hpp	Functions for prescribing boundary conditions
BCManageNormal.hpp	File contains BCManageNormal class for handling normal essential boundary conditions
BCVector.cpp	File contains classes to holds the FE vectors used for prescribing boundary conditions
BCVector.hpp	File contains classes to holds the FE vectors used for prescribing boundary conditions
BDFSecondOrderDerivative.cpp
BDFSecondOrderDerivative.hpp
BelosOperator.cpp	BelosOperator
BelosOperator.hpp	BelosOperator
BelosOperatorAlgebra.cpp
BelosOperatorAlgebra.hpp
benchmarkUtility.hpp	Set of utility for the electrophysiology benchmark
bessel.hpp
bessik.cpp
bessjy.cpp
BlockEpetra_Map.cpp
BlockEpetra_Map.hpp
BlockEpetra_MultiVector.cpp
BlockEpetra_MultiVector.hpp
BlockJacobiPreconditioner.cpp
BlockJacobiPreconditioner.hpp
BlockOperator.cpp
BlockOperator.hpp
fsi/examples/application_aortaFSI/boundaryConditions.hpp	File containing the boundary conditions for the Monolithic Test
fsi/examples/benchmark_GreenshieldsWeller/boundaryConditions.hpp	File containing the boundary conditions for the Monolithic Test
fsi/examples/challenge_VPH/boundaryConditions.hpp	File containing the boundary conditions for the Monolithic Test
fsi/examples/example_SmoothAneurysm/boundaryConditions.hpp	File containing the boundary conditions for the Monolithic Test
fsi/testsuite/fsi_monolithic/boundaryConditions.hpp	File containing the boundary conditions for the Monolithic Test
fsi/testsuite/fsi_restart/boundaryConditions.hpp	File containing the boundary conditions for the Monolithic Test
fsi/testsuite/fsi_segregated/boundaryConditions.hpp
fsi_blocks/testsuite/fsi_restart/boundaryConditions.hpp	File containing the boundary conditions for the Monolithic Test
fsi_blocks/testsuite/fsi_tube/boundaryConditions.hpp	File containing the boundary conditions for the Monolithic Test
navier_stokes_blocks/examples/example_aorta_semi_implicit/boundaryConditions.hpp	File containing the boundary conditions for the Monolithic Test
navier_stokes_blocks/examples/example_external_flow/boundaryConditions.hpp	File containing the boundary conditions of the external fluid flow example
navier_stokes_blocks/testsuite/nonlinear_steady_navier_stokes/boundaryConditions.hpp	File containing the boundary conditions for the Monolithic Test
navier_stokes_blocks/testsuite/nonlinear_time_dependent_navier_stokes/boundaryConditions.hpp	File containing the boundary conditions for the Monolithic Test
navier_stokes_blocks/testsuite/semi_implicit_time_dependent_navier_stokes/boundaryConditions.hpp	File containing the boundary conditions for the Monolithic Test
BuildGraph.hpp	This file contains the definition of the buildGraph function
cavity/cavity.cpp
cavity.cpp
cavity.old.cpp
cavity_ns.cpp
cavity_stokes.cpp
cbessik.cpp
cbessjy.cpp
ComposedOperator.hpp
CompositeOperator.cpp
CompositeOperator.hpp
ComputeFineScalePressure.hpp	This file contains the computation of fine scale velocity inside an element
ComputeFineScaleVelocity.hpp	This file contains the computation of fine scale velocity inside an element
ConfinedOperator.cpp	BelosOperator
ConfinedOperator.hpp	ConfinedOperator
ConvertBareMesh.hpp	Convert a BareMesh into a RegionMesh
copyright_check.cpp
copyright_check.hpp
crlf_check.cpp
crlf_check.hpp
CurrentFE.cpp	File containing the CurrentFE class implementation
CurrentFE.hpp	File containing the CurrentFE class
CurrentFEManifold.cpp
CurrentFEManifold.hpp	A class for a finite element living on a manifold
cvs_iterator.hpp
cylinder.cpp
cylinder.hpp
2d/darcy.cpp
3d/darcy.cpp
2d/darcy.hpp
3d/darcy.hpp
DarcyData.hpp	This file contains the data for all the Darcy solver
DarcyDummy.cpp	This file contains a dummy object to create something in the lib. Otherwise ar complains
DarcySolverLinear.hpp	This file contains a Darcy solver with mixed-hybrid finite elements
DarcySolverNonLinear.hpp	This file contains a non-linear permeability term Darcy equation solver class
DarcySolverTransient.hpp	This file contains a time dependent Darcy equation solver class
DarcySolverTransientNonLinear.hpp	This file contains a non-linear and (possibly) degenerate permeability term Darcy equation using expanded formulation
Displayer.cpp	Template input variables for more general output messages: now it is possible to display not only strings but also Int, Real, etc.
Displayer.hpp	Template input variables for more general output messages: now it is possible to display not only strings but also Int, Real, etc.
DistributedHolzapfelMaterialNonLinear.hpp	This file contains the definition for the St. Venant Kirchhoff linear material
DOF.cpp	Degrees of freedom, the class that provides the localtoglobal table
DOF.hpp	Degrees of freedom, the class that provides the localtoglobal table
DOFGatherer.hpp	Class that produces a list of dof GID from a list of element LIDs
DOFInterface.cpp	Base Class for interfacing dofs between two meshes
DOFInterface.hpp	Base Class for interfacing dofs between two meshes
DOFInterface3Dto2D.cpp	Class for connecting the dof of a mesh (3D) and an interface (2D) that lives on the boundary of the mesh
DOFInterface3Dto2D.hpp	Class for connecting the dof of a mesh (3D) and an interface (2D) that lives on the boundary of the mesh
DOFInterface3Dto3D.cpp	Class for interfacing dofs between two 3D meshes, implementation
DOFInterface3Dto3D.hpp	Class for interfacing dofs between two 3D meshes
DOFInterfaceIO.cpp	Class that handles I/O of fluid-solid DOF interfaces in FSI
DOFInterfaceIO.hpp	Class that handles I/O of fluid-solid DOF interfaces in FSI
DOFLocalPattern.cpp	This file contains the definition of the DOFLocalPattern class
DOFLocalPattern.hpp	This file contains the definition of the DOFLocalPattern class
dummy.cpp
Dummy.cpp
Dummy.hpp
EigenSolver.cpp
EigenSolver.hpp	Class handling an eigensolver
ElectroETABidomainSolver.hpp	Class for solving the Bidomain equations in electrophysiology
ElectroETAMonodomainSolver.hpp	Class for solving the Monodomain model in electrophysiology
ElectroIonicModel.cpp	Base class for ionic models
ElectroIonicModel.hpp
ElectrophysiologyUtility.hpp	Utilities
ElectroStimulus.cpp	Base class for applying cardiac stimulus
ElectroStimulus.hpp	Base class for applying cardiac stimulus
ElementShapes.cpp	Contains the basic element shapes, to be used by Geometric and Finite Elements
ElementShapes.hpp	Contains the basic element shapes, to be used by Geometric and Finite Elements
EmptyPhysicalSolver.hpp	File containing a default physical solver in orde to use the bc interface
EncoderBase64.cpp	An algorithm to encode / decode a string into base64 format
EncoderBase64.hpp	An algorithm to encode / decode a string into base64 format
ensightToHdf5.cpp	Convert from Ensight to HDF5
ensightToHdf5.hpp
ensightToVTK.cpp	Test for converting from Ensight to VTK
entity_selection.cpp	Example usage of MeshEntityContainer features
EnumMapEpetra.hpp	EnumMapEpetra
ETA_ADR1DTest.cpp
ETA_ADR1DTest.hpp
ETA_ADR2DTest.cpp
ETA_ADR2DTest.hpp
ETA_Blocks2DTest.cpp
ETA_Blocks2DTest.hpp
ETA_InterpolateGradient2DTest.cpp
ETA_InterpolateGradient2DTest.hpp
ETA_VectorialADR2DTest.cpp
ETA_VectorialADR2DTest.hpp
ETCurrentBDFE.hpp	A short description of the file content
ETCurrentFE.cpp	This file contains the complete specialization of the ETCurrentFE methods updateDetJacobian and updateInverseJacobian
ETCurrentFE.hpp	This file contains the definition of the ETCurrentFE
ETCurrentFE_FD3.hpp
ETCurrentFlag.hpp	This file contains the definition of the flags for the ETCurrentFE class
ETFESpace.hpp	This file contains the definition of the ETFESpace
ETmain.cpp
ETMatrixElemental.cpp	This file contains the implementation of the ETMatrixElemental class
ETMatrixElemental.hpp	This file contains the definition of the ETMatrixElemental class
ETRobinMembraneSolver.cpp
ETRobinMembraneSolver.hpp
ETVectorElemental.hpp	This file contains the definition of the ETVectorElemental class
Evaluate.hpp	This file contains the definition of the integrate function
EvaluateAtQuadraturePoint.hpp	This file contains the evaluation of vectors at quadrature points
EvaluateNodalExpressionVectorElement.hpp	This file contains the definition of the IntegrateVectorElement class
EvaluateNodalExpressionVectorElementFaceID.hpp	This file contains the definition of the IntegrateVectorElement class
EvaluationAddition.hpp	This file contains the definition of the EvaluationAddition class
EvaluationArcTan.hpp	This file contains the definition of the EvaluationAddition class
EvaluationCubicRoot.hpp	This file contains the definition of the EvaluationAddition class
EvaluationDerivativeArcTan.hpp	This file contains the definition of the EvaluationAddition class
EvaluationDeterminant.hpp	This file contains the definition of the EvaluationTranspose class
EvaluationDetJacobian.hpp	This file contains the definition of the evaluation for the determinat jacobian
EvaluationDivI.hpp	This file contains the definition of the EvaluationDivI class
EvaluationDivision.hpp	This file contains the definition of the EvaluationDivision class
EvaluationDivJ.hpp	This file contains the definition of the EvaluationDivJ class
EvaluationDot.hpp	This file contains the definition of the EvaluationDot class
EvaluationDphiI.hpp	This file contains the definition of the EvaluationDphiI class
EvaluationDphiJ.hpp	This file contains the definition of the EvaluationDphiJ class
EvaluationEmult.hpp	This file contains the definition of the EvaluationEmult class
EvaluationExponential.hpp	This file contains the definition of the EvaluationAddition class
EvaluationExtract1.hpp	This file contains the definition of the EvaluationExtract1 class
EvaluationExtract2.hpp	This file contains the definition of the EvaluationExtract2 class
EvaluationFunctor.hpp	This file contains the definition of the EvaluationFunctor class
EvaluationHK.hpp	This file contains the definition of the evaluation for the diameter
EvaluationIfCrossed.hpp	This file contains the definition of the EvaluationInterpolateValue class
EvaluationInterpolateGradient.hpp	This file contains the definition of the EvaluationInterpolateGradient class
EvaluationInterpolateLaplacian.hpp	This file contains the definition of the EvaluationInterpolateLaplacian class
EvaluationInterpolateValue.hpp	This file contains the definition of the EvaluationInterpolateValue class
EvaluationInverse.hpp	This file contains the definition of the EvaluationTranspose class
EvaluationLaplacianI.hpp	This file contains the definition of the EvaluationLaplacianI class
EvaluationLaplacianJ.hpp	This file contains the definition of the EvaluationLaplacianJ class
EvaluationLogarithm.hpp	This file contains the definition of the EvaluationAddition class
EvaluationMatrix.hpp	This file contains the definition of the EvaluationMatrix class
EvaluationMeas.hpp	This file contains the definition of the evaluation for the measure
EvaluationMeasBDCurrentFE.hpp	This file contains the definition of the evaluation for the measure
EvaluationMetricTensor.hpp	This file contains the definition of the evaluation for the diameter
EvaluationMetricVector.hpp	This file contains the definition of the evaluation for the diameter
EvaluationMinusTransposed.hpp	This file contains the definition of the EvaluationTranspose class
EvaluationNormal.hpp	This file contains the definition of the evaluation for the normal
EvaluationNormalize.hpp	This file contains the definition of the EvaluationTranspose class
EvaluationOuterProduct.hpp	This file contains the definition of the EvaluationEmult class
EvaluationPatchArea.hpp	This file contains the definition of the EvaluationInterpolateValue class
EvaluationPhiI.hpp	This file contains the definition of the EvaluationPhiI class
EvaluationPhiJ.hpp	This file contains the definition of the EvaluationPhiJ class
EvaluationPosition.hpp	This file contains the definition of the evaluation for the position
EvaluationPower.hpp	This file contains the definition of the EvaluationAddition class
EvaluationProduct.hpp	This file contains the definition of the EvaluationAddition class
EvaluationReturnAtQuadraturePoints.hpp	This file contains the definition of the EvaluationInterpolateValue class
EvaluationScalar.hpp	This file contains the definition of the EvaluationScalar class
EvaluationScalarToVector.hpp	This file contains the definition of the EvaluationScalarToVector class
EvaluationSquareRoot.hpp	This file contains the definition of the EvaluationAddition class
EvaluationSubstraction.hpp	This file contains the definition of the EvaluationSubstraction class
EvaluationSymmetricTensor.hpp	This file contains the definition of the EvaluationTranspose class
EvaluationTrace.hpp	This file contains the definition of the EvaluationTranspose class
EvaluationTranspose.hpp	This file contains the definition of the EvaluationTranspose class
EvaluationVector.hpp	This file contains the definition of the EvaluationVector class
EvaluationVectorFromNonConstantMatrix.hpp	This file contains the definition of the EvaluationVector class
EvaluationVectorFromNonConstantScalar.hpp	This file contains the definition of the EvaluationTranspose class
ExampleClass.cpp	A short description of the file content
ExampleClass.hpp	A short description of the file content
ExponentialMaterialNonLinear.hpp	This file contains the definition for the St. Venant Kirchhoff linear material
Exporter.hpp	Exporter and ExporterData classes provide interfaces for post-processing
ExporterEmpty.hpp	This file provides a dummy interface for post-processing
ExporterEnsight.hpp	This file provides an interface for post-processing with ensight
ExporterHDF5.hpp	This file provides the class ExporterHDF5 for post-processing with hdf5
ExporterHDF5Mesh3D.hpp	Class derived from ExporterHDF5 to provide I/O for the mesh partitions (RegionMesh only)
ExporterPolicyHDF5.hpp
ExporterPolicyNoExporter.hpp
ExporterVTK.hpp	This file provides an interface for post-processing with VTK/Paraview by writing files in VTK XML format
ExpressionAddition.hpp	File where the structures for the addition between expressions are defined
ExpressionArcTan.hpp	File where the structures for the product between expressions are defined
ExpressionBase.hpp	File where the base class for the expressions is defined
ExpressionCubicRoot.hpp	File where the structures for the product between expressions are defined
fsi_blocks/solver/ExpressionDefinitions.cpp	File containing the procedures for the local assembly of the differential operators
structure/fem/ExpressionDefinitions.cpp	File containing the procedures for the local assembly of the differential operators
fsi_blocks/solver/ExpressionDefinitions.hpp	File containing the procedures for the local assembly of the differential operators
structure/fem/ExpressionDefinitions.hpp	File containing the procedures for the local assembly of the differential operators
ExpressionDerivativeArcTan.hpp	File where the structures for the product between expressions are defined
ExpressionDeterminant.hpp	File where the structures for the element-wise multiplication between expressions are defined
ExpressionDetJacobian.cpp	The implementation of the h_K expression
ExpressionDetJacobian.hpp	File containing the Expression for the DETERMINANT JACOBIAN
ExpressionDivI.cpp	File containing the implementation of the div(phi_i) expression
ExpressionDivI.hpp	File containing the definition of the divergence (test function) expression
ExpressionDivision.hpp	File where the structures for the division between expressions are defined
ExpressionDivJ.cpp	File containing the implementation of the div(phi_j) expression
ExpressionDivJ.hpp	File containing the definition of the div(phi_j) expression
ExpressionDot.hpp	File where the structures for the dot product between expressions are defined
ExpressionDphiI.cpp	File containing the implementation of the dphi_i expression
ExpressionDphiI.hpp	File containing the definition of the dphi_i expression
ExpressionDphiJ.cpp	File containing the implementation of the dphi_j expression
ExpressionDphiJ.hpp	File containing the definition of the dphi_j expression
ExpressionEmult.hpp	File where the structures for the element-wise multiplication between expressions are defined
ExpressionExponential.hpp	File where the structures for the product between expressions are defined
ExpressionExtract1.hpp	File for the definition of the expression used for the extraction of a row resp. component from a matrix resp. a vector
ExpressionExtract2.hpp	File for the definition of the expression used for the extraction of a component from a matrix
ExpressionFunctor.hpp	File for the definition of the expression used for a general functor
ExpressionHK.cpp	The implementation of the h_K expression
ExpressionHK.hpp	File containing the Expression for the diameter of the element
ExpressionIfCrossed.hpp	File for the definition of the expression used to interpolate FE functions
ExpressionInterpolateGradient.hpp	File for the definition of the expression used to interpolate FE functions
ExpressionInterpolateLaplacian.hpp	File for the definition of the expression used to interpolate FE functions
ExpressionInterpolateValue.hpp	File for the definition of the expression used to interpolate FE functions
ExpressionInverse.hpp	File where the structures for the element-wise multiplication between expressions are defined
ExpressionLaplacianI.cpp	Class representing the laplacian of the test function in an expression
ExpressionLaplacianI.hpp	File containing the definition of the lapacian(phi_i) expression
ExpressionLaplacianJ.cpp	Class representing the laplacian of the test function in an expression
ExpressionLaplacianJ.hpp	File containing the definition of the lapacian(phi_i) expression
ExpressionLogarithm.hpp	File where the structures for the product between expressions are defined
ExpressionMatrix.hpp	File containing the expression to represent a matricial constant
ExpressionMeas.cpp	The implementation of the meas_K expression
ExpressionMeas.hpp	File containing the Expression for the measure of the element
ExpressionMeasBDCurrentFE.hpp	File containing the Expression for the measure of the element
ExpressionMetricTensor.cpp	The implementation of the G expression
ExpressionMetricTensor.hpp	File containing the Expression for the metric tensor of the element
ExpressionMetricVector.cpp	The implementation of the g expression
ExpressionMetricVector.hpp	File containing the Expression for the metric tensor of the element
ExpressionMinusTransposed.hpp	File where the structures for the element-wise multiplication between expressions are defined
ExpressionNormal.cpp	The implementation of the normal expression
ExpressionNormal.hpp	File containing the Expression for the normal to a surface
ExpressionNormalize.hpp	File where the structures for the element-wise multiplication between expressions are defined
ExpressionOuterProduct.hpp	File where the structures for the element-wise multiplication between expressions are defined
ExpressionPatchArea.hpp	File for the definition of the expression used to interpolate FE functions
ExpressionPhiI.cpp	File containing the implementation of the phi_i expression
ExpressionPhiI.hpp	File containing the definition of the phi_i expression
ExpressionPhiJ.cpp	File containing the implementation of the phi_j expression
ExpressionPhiJ.hpp	File containing the definition of the phi_j expression
ExpressionPosition.cpp	The implementation of the position expression
ExpressionPosition.hpp	File containing the Expression for the position
ExpressionPower.hpp	File where the structures for the product between expressions are defined
ExpressionProduct.hpp	File where the structures for the product between expressions are defined
ExpressionReturnAtQuadraturePoints.hpp	File for the definition of the expression used to interpolate FE functions
ExpressionScalar.cpp	File containing the implementation of the scalar expression
ExpressionScalar.hpp	File containing the definition of the scalar expression
ExpressionScalarToVector.hpp	This expression will collect three expressions that return a scalar into a vector. Used for computing the laplacian of a vector field
ExpressionSquareRoot.hpp	File where the structures for the product between expressions are defined
ExpressionSubstraction.hpp	File where the structures for the substraction between expressions are defined
ExpressionSymmetricTensor.hpp	File where the structures for the element-wise multiplication between expressions are defined
ExpressionToEvaluation.hpp	This file contains the definition of the ExpressionToEvaluation class
ExpressionTrace.hpp	File where the structures for the element-wise multiplication between expressions are defined
ExpressionTranspose.hpp	File where the structures for the element-wise multiplication between expressions are defined
ExpressionVector.hpp	File containing the expression to represent a vectorial constant
ExpressionVectorFromNonConstantMatrix.hpp	File containing the expression to represent a vectorial constant
ExpressionVectorFromNonConstantScalar.hpp	File where the structures for the element-wise multiplication between expressions are defined
Factory.hpp	Factory class
FactoryPolicy.hpp	Policies for object lifetime management
FactorySingleton.hpp	Singleton pattern class
FactoryTypeInfo.cpp	Type information class
FactoryTypeInfo.hpp	Type information class
FastAssembler.cpp
FastAssembler.hpp	This file contains the definition of the FastAssembler class
FastAssemblerMixed.cpp
FastAssemblerMixed.hpp	This file contains the definition of the FastAssemblerMixed class
FastAssemblerNS.cpp
FastAssemblerNS.hpp	This file contains the definition of the FastAssembler class
FEDefinitions.cpp	File containing the definition of the FE, quadrature rules, ..
fefct.cpp
fefct.hpp
FEField.hpp	File containing the FEField, FEScalarField and FEVectorField classes
FEFunction.hpp	File containing the FEFunction class
FESpace.hpp	This files contains the description and the implementation of the FESpace class
fsi/examples/example_SmoothAneurysm/flowConditions.cpp	File containing the boundary conditions for the Monolithic Test
fsi/testsuite/fsi_monolithic/flowConditions.cpp	File containing the boundary conditions for the Monolithic Test
fsi/testsuite/fsi_restart/flowConditions.cpp	File containing the boundary conditions for the Monolithic Test
navier_stokes/examples/resistanceBCs/flowConditions.cpp	File containing the boundary conditions for the Monolithic Test
fsi/examples/example_SmoothAneurysm/flowConditions.hpp	File containing the boundary conditions for the Monolithic Test
fsi/testsuite/fsi_monolithic/flowConditions.hpp	File containing the boundary conditions for the Monolithic Test
fsi/testsuite/fsi_restart/flowConditions.hpp	File containing the boundary conditions for the Monolithic Test
navier_stokes/examples/resistanceBCs/flowConditions.hpp
FortranWrapper.hpp	Fortran wrapper for C++
FSIApplyOperator.cpp
FSIApplyOperator.hpp
FSIApplyOperatorNonConforming.cpp
FSIApplyOperatorNonConforming.hpp	Classes to hold algorithms for the mesh motion, for instance, involved in a ALE formulation
FSIcouplingCE.cpp
FSIcouplingCE.hpp	Settings - File which handles the coupling blocks of fluid and solid variables at the fluid-structure interface when conforming discretizations are used
FSIData.cpp	DataFSI - File containing a data container for FSI problems
FSIData.hpp	FSIData - File containing a data container for FSI problems
FSIExactJacobian.cpp
FSIExactJacobian.hpp	Implementation of an FSI (Operator) with Newton algorithm
FSIFixedPoint.cpp
FSIFixedPoint.hpp	Implementation of an FSI with fixed point iterations
FSIHandler.cpp
FSIHandler.hpp	FSIHandler - File handling the solution of the FSI problem
FSIMonolithic.cpp
FSIMonolithic.hpp
FSIMonolithicGE.cpp	A short description of the file content
FSIMonolithicGE.hpp	Monolithic Geometry–Explicit FSI Solver
FSIMonolithicGI.cpp
FSIMonolithicGI.hpp	!
FSIOperator.cpp	Pure virtual operator class for FSI solvers
FSIOperator.hpp	Pure virtual operator class for FSI solvers
FSISolver.cpp	File containing the solver for the instances of the FSI class
FSISolver.hpp	Solver class for FSI
functions.hpp	File containing the boundary conditions for the Monolithic Test
gamma.cpp
GenericDriver.cpp
GeometricMap.cpp	This file contains the implementation of the GeometricMap class (and an helper function)
GeometricMap.hpp	This file contains the definition of the GeometricMap class (and an helper function)
GetPot.hpp
GhostEntityData.cpp	Ghost entity data structure
GhostEntityData.hpp	Ghost entity data structure
GhostHandler.hpp	Class to manage ghost data across procs
GradientRecovery.hpp	This file contains the definition of the methods for gradient recovery procedures
gradUExactFunctor.hpp
GraphCutterBase.hpp	Graph cutter base class (abstract)
GraphCutterParMETIS.hpp	Class that partitions the graph associated with a mesh. Uses the ParMETIS graph processing library
GraphCutterZoltan.hpp	Class that partitions the graph associated with a mesh. Uses the Zoltan graph processing library
GraphElement.hpp	This file contains the definition of the GraphElement class
GraphUtil.hpp	Utilitary functions and type definitions for graph partitioning
HarmonicExtensionSolver.hpp	Classes to hold algorithms for the mesh motion, for instance, involved in a ALE formulation
HDF5IO.cpp	Convenience wrapper for the C interface of the HDF5 library
HDF5IO.hpp	Convenience wrapper for the C interface of the HDF5 library
heart.cpp	Cardiac Electrophysiology Test
heart.hpp	Cardiac Electrophysiology Test
HeartBidomainData.cpp	File containing a class for handling Bidomain data with GetPot
HeartBidomainData.hpp	File containing a class for handling Bidomain data with GetPot
HeartBidomainSolver.hpp	Class for solving the Bidomain models in electrophysiology
HeartFunctors.cpp	Heart Functors for the Luo-Rudy Kinetics
HeartFunctors.hpp	Heart Functors for the Luo-Rudy Kinetics
HeartIonicData.cpp	File containing a class for handling Ionic model data with GetPot
HeartIonicData.hpp	File containing a class for handling Ionic model data with GetPot
HeartIonicSolver.hpp	Class for choosing and solving ionic models in electrophysiology. Mitchel-Schaeffer, Rogers-McCulloch, Luo-Rudy I
HeartMonodomainData.cpp	File containing a class for handling Monodomain data with GetPot
HeartMonodomainData.hpp	File containing a class for handling Monodomain data with GetPot
HeartMonodomainSolver.hpp	Class for solving the Monodomain equations in electrophysiology
HeartStiffnessFibers.hpp	Contains an extension to the elemOper for including the fibers in the stiffness term for the Bidomain, Monodomain, and @ Electromechanical problems
HeartUtility.hpp	Utilities
HolzapfelGeneralizedMaterialNonLinear.hpp	This file contains the definition for the St. Venant Kirchhoff linear material
HolzapfelMaterialNonLinear.hpp	This file contains the definition for the St. Venant Kirchhoff linear material
hyperbolic.cpp
hyperbolic.hpp
HyperbolicData.hpp	Data for hyperbolic scalar equations
HyperbolicFluxNumerical.hpp	Numerical fluxes for hyperbolic scalar equations
HyperbolicSolver.hpp	Solver class for hyperbolic scalar equations
IfpackPreconditioner.cpp
IfpackPreconditioner.hpp
impes.cpp
impes.hpp
Importer.cpp	Import mesh data formats into LifeV mesh data structure
Importer.hpp	Import mesh data formats into LifeV mesh data structure
ImporterMesh2D.hpp	Mesh reader from mesh2D files
ImporterMesh3D.cpp	Mesh reader from mesh3d files
ImporterMesh3D.hpp	Mesh reader from mesh3d files
InitPolicyInterpolation.hpp
InitPolicyProjection.hpp
InitPolicySolver.hpp
inspect.cpp
inspector.hpp
Integrate.hpp	This file contains the definition of the integrate function
IntegrateMatrixElement.hpp	This file contains the definition of the IntegrateMatrixElement class
IntegrateMatrixElementLSAdapted.hpp	This file contains the definition of the IntegrateMatrixElementLSAdapted class
IntegrateMatrixFaceID.hpp	This file contains the definition of the IntegrateMatrixFaceID class
IntegrateMatrixFaceIDLSAdapted.hpp	This file contains the definition of the IntegrateMatrixFaceID class
IntegrateMatrixVolumeID.hpp	This file contains the definition of the IntegrateMatrixVolumeID class
IntegrateValueElement.hpp	This file contains the definition of the IntegrateValueElement class
IntegrateValueElementLSAdapted.hpp	File containing the class IntegrateValueElementLSAdapted
IntegrateVectorElement.hpp	This file contains the definition of the IntegrateVectorElement class
IntegrateVectorElementLSAdapted.hpp	This file contains the definition of the IntegrateVectorElementLSAdapted class
IntegrateVectorFaceID.hpp	This file contains the definition of the IntegrateVectorElement class
IntegrateVectorFaceIDLSAdapted.hpp	This file contains the definition of the IntegrateMatrixFaceID class
IntegrateVectorVolumeID.hpp	This file contains the definition of the IntegrateVectorElement class
InternalEntitySelector.cpp	This file implements the standard selector for internal entities
InternalEntitySelector.hpp	It contains the standard selector for internal entities
Interpolation.cpp
Interpolation.hpp	A short description of the file content
InvertibleOperator.cpp
InvertibleOperator.hpp
IonicAlievPanfilov.cpp	Ionic model of Aliev-Panfilov
IonicAlievPanfilov.hpp
IonicFitzHughNagumo.cpp	Ionic model of FitzHugh-Nagumo
IonicFitzHughNagumo.hpp
IonicFox.cpp	Ionic model based on Fox model
IonicFox.hpp
IonicGoldbeter.cpp	Intracellular Calcium model from Goldbeter et al. (1990). By "potential" we
IonicGoldbeter.hpp
IonicHodgkinHuxley.cpp	Ionic model of Hodgkin and Huxley
IonicHodgkinHuxley.hpp
IonicLuoRudyI.cpp	Ionic model Luo-Rudy I
IonicLuoRudyI.hpp
IonicMinimalModel.cpp	Ionic model of Bueno-Orovio et al
IonicMinimalModel.hpp
IonicMitchellSchaeffer.cpp	Ionic model based on Mitchell-Schaeffer model
IonicMitchellSchaeffer.hpp
IonicNoblePurkinje.cpp	Ionic model of Noble for Purkinje cells
IonicNoblePurkinje.hpp
IonicTenTusscher06.cpp	Ionic model of ten Tusscher-Panfilov 2006
IonicTenTusscher06.hpp
KimMoin.cpp
KimMoin.hpp
Laplacian.cpp
Laplacian.hpp
laplacianExact.hpp
laplacianExactGradient.hpp
laplacian/laplacianFunctor.hpp
mesh_volume_subdivision/laplacianFunctor.hpp
laplacianSource.hpp
LevelSetBDQRAdapter.hpp	Adapter for the quadrature on a given level set
LevelSetData.cpp	Contains the data container for the LevelSetSolver
LevelSetData.hpp	Contains the data container for the LevelSetSolver
LevelSetQRAdapter.hpp	Adapter for the quadrature on a given level set
LevelSetSolver.hpp	File constaining a solver for the level set equation
license_check.cpp
license_check.hpp
LifeAssert.hpp	Assert macros for LifeV
LifeAssertSmart.cpp	Complex assertion mechanism
LifeAssertSmart.hpp	Complex assertion mechanism
LifeChrono.hpp	Chronometer and fake chronometer class class
LifeChronoManager.hpp
LifeDebug.cpp	Classes for debugging
LifeDebug.hpp	Classes for debugging
LifeV.cpp	Definition of nDimensions
LifeV.hpp	LifeV main header file
LifeVersion.cpp	The file was created from KDE/kdelibs/kdecore/kdeversion.hpp and accomodated to LifeV needs
LifeVersion.hpp	The file was created from KDE/kdelibs/kdecore/kdeversion.hpp and accomodated to LifeV needs
linear_function.hpp
/linear_function.hpp
LinearElasticity.cpp
LinearElasticity.hpp	Implementation of Linear elastic structural model
LinearOperator.hpp	Linear Operator
LinearOperatorAlgebra.cpp
LinearOperatorAlgebra.hpp
LinearSolver.cpp	LinearSolver
LinearSolver.hpp	LinearSolver
link_check.cpp
link_check.hpp
long_name_check.cpp
long_name_check.hpp
lumpedHeart.cpp	File containing the lumped heart for the Monolithic Test
lumpedHeart.hpp	File containing the lumped heart for the Monolithic Test
LumpedOperator.cpp
LumpedOperator.hpp
doc/CodingGuidelines/main.cpp	A short description of the test content
lifev/core/examples/utility_mesh_extractor/main.cpp
lifev/core/examples/utility_mesh_reader/main.cpp
lifev/core/examples/utility_mesh_reorder/main.cpp	File containing a utility to reorder a mesh
lifev/core/testsuite/adr_assembler/1d/main.cpp
lifev/core/testsuite/adr_assembler/2d/main.cpp
lifev/core/testsuite/adr_assembler/3d/main.cpp
lifev/core/testsuite/bdf/main.cpp	Simple Fourier test with Dirichlet Boundary condition
lifev/core/testsuite/fe_function/main.cpp
lifev/core/testsuite/fem/main.cpp	Test for the CurrentFE update
lifev/core/testsuite/hyperbolic/main.cpp
lifev/core/testsuite/interpolation/RBF_nonconformingPolynomialOrders/main.cpp
lifev/core/testsuite/linear_solver/main.cpp
lifev/core/testsuite/linear_solver_preconditioner/main.cpp
lifev/core/testsuite/matrix_epetra_structured_framework/main.cpp
lifev/core/testsuite/mesh/mesh_partition_tool/main.cpp	Test for the MeshPartitionTool class
lifev/core/testsuite/parser/main.cpp	File containing the parser test
lifev/core/testsuite/template_test/main.cpp	A short description of the test content
lifev/core/testsuite/vector_container/main.cpp	File containing the vector container test
lifev/core/testsuite/verify_solution/main.cpp
lifev/darcy/examples/twophase_impes/main.cpp
lifev/darcy/testsuite/basic_test/2d/main.cpp
lifev/darcy/testsuite/basic_test/3d/main.cpp
lifev/dummy/testsuite/basic_test/main.cpp
lifev/electrophysiology/examples/example_benchmarkPurkinje/main.cpp	Electrophysiology benchmark with Noble-Purkinje excitation model
lifev/electrophysiology/examples/example_bidomain/main.cpp	Test for ElectroETAbidomainSolver and IonicMinimalModel
lifev/electrophysiology/examples/example_ECG/main.cpp	0D test with the Negroni Lascano model of 1996
lifev/electrophysiology/testsuite/test_0DAlievPanfilovModel/main.cpp	0D test with the Aliev - Panfilov model 1996. Parameters are from Nash - Panfilov 2004
lifev/electrophysiology/testsuite/test_0DFitzHughNagumoModel/main.cpp	0D test with the Fitz-Hugh Nagumo model
lifev/electrophysiology/testsuite/test_0DFoxModel/main.cpp	0D test with the Fox model
lifev/electrophysiology/testsuite/test_0DGoldbeterModel/main.cpp	0D test with the Goldbeter model for simplified Calcium dynamics
lifev/electrophysiology/testsuite/test_0DHodgkinHuxley/main.cpp	0D test with the minimal model
lifev/electrophysiology/testsuite/test_0DLuoRudyIModel/main.cpp	0D test with the Luo Rudy Phase I model
lifev/electrophysiology/testsuite/test_0DMinimalModel/main.cpp	0D test with the minimal model
lifev/electrophysiology/testsuite/test_0DMitchellSchaefferModel/main.cpp	0D test with the Mitchell Schaeffer
lifev/electrophysiology/testsuite/test_0DNoblePurkinje/main.cpp	0D test with the minimal model
lifev/electrophysiology/testsuite/test_0DTenTusscher06Model/main.cpp	0D test with Ten Tusscher et al. 2006 model
lifev/electrophysiology/testsuite/test_benchmark/main.cpp	Electrophysiology benchmark proposed in Niederer et al. 2011
lifev/electrophysiology/testsuite/test_fibers/main.cpp	Generation muscular fibers and sheets
lifev/electrophysiology/testsuite/test_pacing/main.cpp	Test for using the pacing protocol
lifev/electrophysiology/testsuite/test_restart/main.cpp	Test to restart a simulation from an hdf5 exported solution
lifev/electrophysiology/testsuite/test_ventricle/main.cpp	Test on an idealized ventricle
lifev/electrophysiology/unit/test_StimulusPacingProtocol/main.cpp
lifev/electrophysiology/unit/test_StimulusPMJ/main.cpp
lifev/electrophysiology/unit/test_StimulusSingleSource/main.cpp
lifev/eta/examples/example_biPhasic/main.cpp
lifev/eta/examples/laplacian/main.cpp	Laplacian problem
lifev/eta/examples/mesh_volume_subdivision/main.cpp	Laplacian problem
lifev/eta/examples/vortex_shedding/main.cpp
lifev/eta/testsuite/ADR_1D/main.cpp
lifev/eta/testsuite/ADR_2D/main.cpp
lifev/eta/testsuite/blocks_2D/main.cpp
lifev/eta/testsuite/boundary_integrals/main.cpp
lifev/eta/testsuite/interpolate_gradient_2D/main.cpp
lifev/eta/testsuite/mt_assembly/main.cpp	Test for building matrices with a static graph and ETA
lifev/eta/testsuite/static_graph/main.cpp	Test for building matrices with a static graph and ETA
lifev/eta/testsuite/vectorial_ADR_2D/main.cpp
lifev/eta/tutorials/10_ETA_QR_Advanced/main.cpp	Advanced tutorial about the quadrature in the ETA
lifev/eta/tutorials/11_ETA_LaplacianPhiI/main.cpp	Tutorial for gradient interpolation
lifev/eta/tutorials/12_ETA_LaplacianPhiJ/main.cpp	Tutorial for laplacian of trial functions
lifev/eta/tutorials/13_ETA_LaplacianVector/main.cpp	Tutorial for laplacian of trial functions
lifev/eta/tutorials/1_ETA_laplacian/main.cpp	Tutorial introducing the expression assembly
lifev/eta/tutorials/2_ETA_ADR/main.cpp	Tutorial for the assembly of the ADR problem and comparison with classical assembly
lifev/eta/tutorials/3_ETA_rhs_and_value/main.cpp	Tutorial for the assembly of a right hand side and the computation of benchmark values
lifev/eta/tutorials/4_ETA_vectorial_laplacian/main.cpp	Tutorial for the assembly of the vectorial laplacian
lifev/eta/tutorials/5_ETA_debug_expressions/main.cpp	Tutorial explaining how to debug a failing expression
lifev/eta/tutorials/6_ETA_functor/main.cpp	Tutorial for the use of functor in the ETA framework
lifev/eta/tutorials/7_ETA_blocks/main.cpp	Tutorial for the use of block structures with the ETA framework
lifev/eta/tutorials/8_ETA_block_manip/main.cpp	Tutorial for a "better" usage of the blocks
lifev/eta/tutorials/9_ETA_gradient_interpolation/main.cpp	Tutorial for gradient interpolation
lifev/eta/tutorials/9_ETA_QRProvider/main.cpp	Tutorial about the quadrature rule in the ETA
lifev/fsi/examples/application_aortaFSI/main.cpp	For testing the benchmark contained in the
lifev/fsi/examples/benchmark_GreenshieldsWeller/main.cpp	For testing the benchmark contained in the
lifev/fsi/examples/challenge_VPH/main.cpp	For testing the benchmark contained in the
lifev/fsi/examples/example_SmoothAneurysm/main.cpp	File containing the Monolithic Test
lifev/fsi/testsuite/fsi_monolithic/main.cpp	File containing the Monolithic Test
lifev/fsi/testsuite/fsi_restart/main.cpp	File containing the Monolithic Test
lifev/fsi/testsuite/fsi_segregated/main.cpp	The time discretization is carried out using BDF methods of order 2. At the moment, even is the Newmark method is available for the temporal discretization of the single problems( e.g. in test_structuralsolver), it cannot be used in the FSI framework since the class TimeAdvanceNewmark is not registered as one of the possible instances of the abstrac class TimeAdvance
lifev/fsi_blocks/testsuite/fsi_restart/main.cpp
lifev/fsi_blocks/testsuite/fsi_tube/main.cpp
lifev/heart/examples/basic_example/main.cpp	Main for the test_heart
lifev/level_set/testsuite/basic_test/main.cpp
lifev/level_set/tutorials/1_Volume_computation/main.cpp	Tutorial introducing the expression assembly specialized for the level set problem
lifev/multiscale/testsuite/multiscale/main.cpp	File containing the Multiscale Test
lifev/multiscale/testsuite/onedmodel/main.cpp	File containing the One Dimensional Test
lifev/navier_stokes/examples/computeWSS/main.cpp
lifev/navier_stokes/examples/cylinder/main.cpp
lifev/navier_stokes/examples/oseen_assembler/main.cpp
lifev/navier_stokes/examples/resistanceBCs/main.cpp
lifev/navier_stokes/examples/TestCases/main.cpp
lifev/navier_stokes/testsuite/exporter_ensight_to_hdf5/main.cpp
lifev/navier_stokes/testsuite/RossEthierSteinman/main.cpp
lifev/navier_stokes_blocks/examples/example_aorta_semi_implicit/main.cpp
lifev/navier_stokes_blocks/examples/example_external_flow/main.cpp
lifev/navier_stokes_blocks/testsuite/nonlinear_steady_navier_stokes/main.cpp
lifev/navier_stokes_blocks/testsuite/nonlinear_time_dependent_navier_stokes/main.cpp
lifev/navier_stokes_blocks/testsuite/semi_implicit_time_dependent_navier_stokes/main.cpp
lifev/structure/examples/example_anisotropicTraction/main.cpp
lifev/structure/examples/example_bodyForces/main.cpp
lifev/structure/examples/example_checkigForceTerm/main.cpp
lifev/structure/examples/example_checkingFibersDirection/main.cpp
lifev/structure/examples/example_computationNorm/main.cpp
lifev/structure/examples/example_computePrincipalTensions/main.cpp
lifev/structure/examples/example_computingJacobian/main.cpp
lifev/structure/examples/example_CookMembrane/main.cpp
lifev/structure/examples/example_creatingDamagedZone/main.cpp
lifev/structure/examples/example_evaluatingScalarVectorialTensorialQuantitiesUsingETA/main.cpp
lifev/structure/examples/example_principalTensionsInflationExtensions/main.cpp
lifev/structure/examples/example_tractionWithSymmetry/main.cpp
lifev/structure/testsuite/anisotropicLaw/main.cpp
lifev/structure/testsuite/evaluateNodalETA/main.cpp
lifev/structure/testsuite/principalTensions/main.cpp
lifev/structure/testsuite/structuralsolver/main.cpp
lifev/structure/testsuite/time_advance_i/main.cpp
lifev/structure/testsuite/time_advance_ii/main.cpp
lifev/zero_dimensional/testsuite/basic_test/main.cpp	File containing the ZeroDimensional test
examples/stokes_repeated_mesh/main_2d.cpp
testsuite/repeated_mesh_2D/main_2d.cpp
main_getpot.cpp	Test GetPot type conversion
core/testsuite/offline_partition_io/main_read.cpp	Test for PartitionIO class - read and solve
fsi_blocks/examples/fsi_offline_partition/main_read.cpp	Example for DOFInterfaceIO class - read
core/testsuite/offline_partition_io/main_write.cpp	Test for PartitionIO class - cut and write
core/testsuite/partition_io/main_write.cpp	Test for PartitionIO class - cut and write
fsi_blocks/examples/fsi_offline_partition/main_write.cpp	Example for the DOFInterfaceIO class - write
structure/examples/example_partitionMesh/main_write.cpp	Test for PartitionIO class - cut and write
mainAnisotropic.cpp
mainKimMoin.cpp
mainRossEthierSteinman.cpp
MapEpetra.cpp	MapEpetra
MapEpetra.hpp	MapEpetra
MapEpetraData.hpp	MapEpetraData
MapVector.hpp	The file contains the MapVector class
Marker.cpp	Implementations for Marker.hpp
Marker.hpp	Basic definition of markers
MarkerDefinitions.hpp	A simple implementations of Markers
MatrixBlockMonolithicEpetra.hpp	The file contains the MatrixBlockMonolithicEpetra class
MatrixBlockMonolithicEpetraView.hpp	The file contains the MatrixBlockMonolithicEpetraView class
MatrixBlockStructure.cpp	Implementation file for MatrixBlockStructure
MatrixBlockStructure.hpp	File containing the MatrixBlockStructure class
MatrixContainer.hpp
MatrixElemental.cpp	Matrix for elementary assembly
MatrixElemental.hpp	Matrix for elementary assembly
MatrixEpetra.hpp	MatrixEpetra
MatrixEpetraStructured.hpp	The file contains the MatrixEpetraStructured class
MatrixEpetraStructuredUtility.hpp	The file contains utility functions to manipulate MatrixEpetraStructuredView objects
MatrixEpetraStructuredView.hpp	The file contains the MatrixEpetraStructuredView class
MatrixGraph.cpp
MatrixGraph.hpp	This file contains the definition of the MatrixGraph class
MatrixSmall.hpp	This file contains a simple matrix class
MeshChecks.hpp	Base utilities operating on meshes
MeshColoring.cpp
MeshColoring.hpp	File containing a class for coloring meshes
MeshData.cpp	File containing a class for handling spatial discretization
MeshData.hpp	File containing a class for handling spatial discretization
MeshElement.hpp	Zero dimensional entity
MeshElementBare.cpp	Special routines to read meshes and special structures for sides and faces handling
MeshElementBare.hpp	Special routines to read meshes and special structures for sides and faces handling
MeshElementMarked.hpp	Geometric elements
MeshEntity.cpp
MeshEntity.hpp	This file contains the MeshEntity class
MeshEntityContainer.hpp	The file contains two classes implementing a wrap up of Standard Library vector class to allow indexing from one
MeshExtractor.hpp
MeshGeometricMap.hpp	This file contains an helper function to get a geometric map adapted to a mesh
MeshLoadingUtility.hpp	Base utilities operating on meshes
MeshPartBuilder.hpp	Class that builds a mesh part, after the graph has been partitioned
MeshPartitioner.hpp	Class that handles mesh partitioning
mesh/MeshPartitionerOfflineFSI.hpp	Offline mesh partitioning for FSI
blocks/mesh/MeshPartitionerOfflineFSI.hpp	Offline mesh partitioning for FSI
MeshPartitionTool.hpp	Class that does flexible mesh partitioning
MeshUtility.cpp	Base utilities operating on meshes
MeshUtility.hpp	Base utilities operating on meshes
MeshVertex.cpp	Zero dimensional entity
MeshVertex.hpp	Zero dimensional entity
MeshVolumeSubdivision.hpp
MeshWriter.hpp	Writes the mesh in medit format
minmax_check.cpp
minmax_check.hpp
MLPreconditioner.cpp
MLPreconditioner.hpp
MonolithicBlock.cpp
MonolithicBlock.hpp	This file contains a pure virtual class for the linear operators with a block structure (i.e. block matrices and preconditioners). The specializations of this class can be used to handle many types of composed preconditioners and composed operators
MonolithicBlockComposed.cpp
MonolithicBlockComposed.hpp	This file contains a class which is suited for handling a block-structured matrix that can be written as a multiplication of a variable number of factors. It contains a vector of pointers for each factor, BCHandler, FESpace and for each coupling part
MonolithicBlockComposedDN.cpp
MonolithicBlockComposedDN.hpp	This file contains a class implementing a preconditioner for the Fluid-Structure Interaction system
MonolithicBlockComposedDND.cpp
MonolithicBlockComposedDND.hpp	Composed preconditioner for a three blocks coupled problem
MonolithicBlockComposedDNND.cpp
MonolithicBlockComposedDNND.hpp
MonolithicBlockComposedNN.cpp
MonolithicBlockComposedNN.hpp	Block (a little exotic) preconditioner
MonolithicBlockMatrix.cpp
MonolithicBlockMatrix.hpp	This file contains a class which handles matrices with a block structure
MonolithicBlockMatrixRN.cpp
MonolithicBlockMatrixRN.hpp	File containing a class for handling a 2-blocks matrix with Robin-Neumann coupling
MonolithicRobinInterface.cpp
MonolithicRobinInterface.hpp	An interface implementing the Robin coupling
MultiscaleAlgorithm.cpp	File containing the Multiscale Algorithm
MultiscaleAlgorithm.hpp	File containing the Multiscale Algorithm
MultiscaleAlgorithmAitken.cpp	File containing the Multiscale Aitken Algorithm
MultiscaleAlgorithmAitken.hpp	File containing the Multiscale Aitken Algorithm
MultiscaleAlgorithmBroyden.cpp	File containing the Multiscale Broyden Algorithm
MultiscaleAlgorithmBroyden.hpp	File containing the Multiscale Broyden Algorithm
MultiscaleAlgorithmExplicit.cpp	File containing the Multiscale Explicit Algorithm
MultiscaleAlgorithmExplicit.hpp	File containing the Multiscale Explicit Algorithm
MultiscaleAlgorithmNewton.cpp	File containing the Multiscale Newton Algorithm
MultiscaleAlgorithmNewton.hpp	File containing the Multiscale Newton Algorithm
MultiscaleCommunicatorsManager.cpp	File containing the Multiscale Communicators Manager
MultiscaleCommunicatorsManager.hpp	File containing the Multiscale Communicators Manager
MultiscaleCoupling.cpp	File containing the Multiscale Physical Coupling
MultiscaleCoupling.hpp	File containing the Multiscale Physical Coupling
MultiscaleCouplingBoundaryCondition.cpp	File containing the Multiscale Coupling BoundaryCondition
MultiscaleCouplingBoundaryCondition.hpp	File containing the Multiscale Coupling BoundaryCondition
MultiscaleCouplingMeanNormalStress.cpp	File containing the multiscale mean normal stress coupling class
MultiscaleCouplingMeanNormalStress.hpp	File containing the multiscale mean normal stress coupling class
MultiscaleCouplingMeanNormalStressArea.cpp	File containing the multiscale mean normal stress coupling class
MultiscaleCouplingMeanNormalStressArea.hpp	File containing the multiscale mean normal stress coupling class
MultiscaleCouplingMeanNormalStressValve.cpp	File containing the multiscale mean normal stress coupling class with simple valve
MultiscaleCouplingMeanNormalStressValve.hpp	File containing the multiscale mean normal stress coupling class with simple valve
MultiscaleCouplingMeanTotalNormalStress.cpp	File containing the Multiscale Coupling Stress
MultiscaleCouplingMeanTotalNormalStress.hpp	File containing the Multiscale Coupling Stress
MultiscaleCouplingMeanTotalNormalStressArea.cpp	File containing the multiscale mean normal stress coupling class
MultiscaleCouplingMeanTotalNormalStressArea.hpp	File containing the multiscale mean normal stress coupling class
MultiscaleDefinitions.hpp	File containing the Multiscale Definitions
MultiscaleGlobalData.cpp	File containing the Multiscale Global Physical Data
MultiscaleGlobalData.hpp	File containing the Multiscale Physical Data
MultiscaleInterface.hpp	File containing the Multiscale Interface for Fluid problems
MultiscaleModel.cpp	File containing the Multiscale Physical Model
MultiscaleModel.hpp	File containing the Multiscale Physical Model
MultiscaleModel0D.cpp	File containing the Multiscale Model 0D
MultiscaleModel0D.hpp	File containing the Multiscale Model 0D
MultiscaleModelFluid3D.cpp	File containing the Multiscale Model Fluid3D
MultiscaleModelFluid3D.hpp	File containing the Multiscale Model Fluid3D
MultiscaleModelFSI1D.cpp	File containing the Multiscale Model 1D
MultiscaleModelFSI1D.hpp	File containing the Multiscale Model 1D
MultiscaleModelFSI3D.cpp	File containing the Multiscale Model FSI3D
MultiscaleModelFSI3D.hpp	File containing the Multiscale Model FSI3D
MultiscaleModelMultiscale.cpp	File containing the Multiscale Model Multiscale
MultiscaleModelMultiscale.hpp	File containing the Multiscale Model Multiscale
MultiscaleModelWindkessel0D.cpp	File containing the Multiscale Windkessel 0D
MultiscaleModelWindkessel0D.hpp	File containing the Multiscale Windkessel 0D
MultiscaleSolver.cpp	File containing the Multiscale Solver
MultiscaleSolver.hpp	File containing the Multiscale Solver
navier_stokes.hpp
navierStokes.hpp
NavierStokesCavity.cpp	Navier-Stokes cavity problem
NavierStokesCavity.hpp	Navier-Stokes cavity problem
NavierStokesEthierSteinman.cpp	Navier-Stokes Ethier-Steinman problem
NavierStokesEthierSteinman.hpp	Navier-Stokes cavity problem
NavierStokesOperator.cpp
NavierStokesOperator.hpp	Navier-Stokes operator equations
NavierStokesPreconditionerOperator.hpp	NavierStokesPreconditionerOperator - Abstract interface for preconditioners for Navier-Stokes
NavierStokesProblem.hpp
NavierStokesSolver.hpp
NavierStokesSolverBlocks.cpp
NavierStokesSolverBlocks.hpp	Navier Stokes solver
NeighborMarker.hpp
NeoHookean.cpp
NeoHookean.hpp	Implementation of Neohookean structural model
NeoHookeanMaterialNonLinear.hpp	This file contains the definition for the St. Venant Kirchhoff linear material
Newmark.cpp
Newmark.hpp
nonlinear_function.hpp
/nonlinear_function.hpp
NonLinearAitken.hpp	File containing the non-linear generalized Aitken algorithm
NonLinearBrent.hpp	Implementation of Brent's method for root finding
NonLinearLineSearch.hpp	Line-search algorithm with parabolic interpolation
NonLinearRichardson.hpp	Preconditioned relaxed solver for non linear problems
Norm.hpp
OneDFSIBC.cpp	File containing a class for the boundary conditions of the 1D model
OneDFSIBC.hpp	File containing a class for the boundary conditions of the 1D model
OneDFSIBCHandler.cpp	File containing a class for the boundary conditions handling of the 1D model
OneDFSIBCHandler.hpp	File containing a class for the boundary conditions handling of the 1D model
OneDFSIData.cpp	File containing a class for 1D model data handling
OneDFSIData.hpp	File containing a class for 1D model data handling
OneDFSIDefinitions.hpp	One Dimensional Model Global Definitions
OneDFSIFlux.hpp	File containing a base class for 1D model flux function
OneDFSIFluxLinear.cpp	File containing a base class for linear 1D model flux function
OneDFSIFluxLinear.hpp	File containing a base class for linear 1D model flux function
OneDFSIFluxNonLinear.cpp	File containing a base class for non linear 1D model flux function
OneDFSIFluxNonLinear.hpp	File containing a base class for non linear 1D model flux function
OneDFSIFunction.hpp	File containing the interface class for the boundary function of 1D model
OneDFSIFunctionSolverDefined.cpp	File containing some functions for the boundary conditions of 1D models
OneDFSIFunctionSolverDefined.hpp	File containing some functions for the boundary conditions of 1D models
OneDFSIPhysics.hpp	File containing a base class providing physical operations for the 1D model data
OneDFSIPhysicsLinear.cpp	File containing a class providing linear physical operations for the 1D model data
OneDFSIPhysicsLinear.hpp	File containing a class providing linear physical operations for the 1D model data
OneDFSIPhysicsNonLinear.cpp	File containing a class providing non linear physical operations for the 1D model data
OneDFSIPhysicsNonLinear.hpp	File containing a class providing non linear physical operations for the 1D model data
OneDFSISolver.cpp	File containing a solver class for the 1D model
OneDFSISolver.hpp	File containing a solver class for the 1D model
OneDFSISource.hpp	File containing a base class for the source function of the 1D hyperbolic problem
OneDFSISourceLinear.cpp	File containing a class for the linear source function B of the 1D hyperbolic problem
OneDFSISourceLinear.hpp	File containing a class for the linear source term of the 1D hyperbolic problem
OneDFSISourceNonLinear.cpp	File containing a class for the non linear source function B of the 1D hyperbolic problem
OneDFSISourceNonLinear.hpp	File containing a class for the non linear source term of the 1D hyperbolic problem
OpenMPParameters.cpp	Class that handles setting OpenMP parameters
OpenMPParameters.hpp	Class that handles setting OpenMP parameters
OperationSmallAddition.hpp	This file contains information about the addition operation between *Small classes
OperationSmallArcTan.hpp	This file contains information about the addition operation between *Small classes
OperationSmallCubicRoot.hpp	This file contains information about the addition operation between *Small classes
OperationSmallDerivativeArcTan.hpp	This file contains information about the addition operation between *Small classes
OperationSmallDeterminant.hpp	This file contains information about the transpose operation for Small* classes
OperationSmallDivision.hpp	This file contains information about the division operation between *Small classes
OperationSmallDot.hpp	This file contains information about the dot product operation between Small* classes
OperationSmallEmult.hpp	This file contains information about the element-wise multiplication operation between Small* classes
OperationSmallExponential.hpp	This file contains information about the addition operation between *Small classes
OperationSmallExtract.hpp	This file contains information about the extraction of a row or component within Small* classes
OperationSmallInverse.hpp	This file contains information about the transpose operation for Small* classes
OperationSmallLogarithm.hpp	This file contains information about the addition operation between *Small classes
OperationSmallMinusTranspose.hpp	This file contains information about the transpose operation for Small* classes
OperationSmallNormalize.hpp	This file contains information about the transpose operation for Small* classes
OperationSmallOuterProduct.hpp	This file contains information about the element-wise multiplication operation between Small* classes
OperationSmallPower.hpp	This file contains information about the addition operation between *Small classes
OperationSmallProduct.hpp	This file contains information about the product operation between *Small classes
OperationSmallSquareRoot.hpp	This file contains information about the addition operation between *Small classes
OperationSmallSubstraction.hpp	This file contains information about the substraction operation between *Small classes
OperationSmallSymmetricTensor.hpp	This file contains information about the transpose operation for Small* classes
OperationSmallTrace.hpp	This file contains information about the transpose operation for Small* classes
OperationSmallTranspose.hpp	This file contains information about the transpose operation for Small* classes
OseenAssembler.hpp	A short description of the file content
OseenData.cpp	File containing the implementation of the file OseenData.hpp
OseenData.hpp	File containing a class for handling Navier-Stokes data with GetPot
OseenSolver.hpp	This file contains an Oseen equation solver class
OseenSolverImplementation.cpp	File containing the implementation of the file OseenSolver.hpp
OseenSolverShapeDerivative.hpp	This file contains an Oseen equation solver class with shape derivative for fluid structure interaction problem
Parser.cpp	File containing the Parser interface
Parser.hpp	File containing the Parser interface
ParserDefinitions.hpp	File containing the Parser definitions
ParserGmsh.hpp	Gmsh files (.gmsh, .msh) reader
ParserINRIAMesh.hpp
ParserSpiritGrammar.hpp	File containing the Boost Spirit parser grammar
PartitionIO.hpp	Class that handles I/O of mesh parts (for offline partitioning mode)
pExactFunctor.hpp
PostProcessingBoundary.hpp	File containing a class with methods to manage fields defined on the domain boundary
Preconditioner.cpp	Epetra preconditioner
Preconditioner.hpp	Epetra preconditioner
PreconditionerAztecOO.cpp	AztecOO preconditioner
PreconditionerAztecOO.hpp	AztecOO preconditioner
PreconditionerBlock.cpp	PreconditionerBlock
PreconditionerBlock.hpp
PreconditionerComposed.cpp
PreconditionerComposed.hpp	File containing the Composed Preconditioner Class
PreconditionerComposition.cpp	This file contains the PreconditionerComposition class
PreconditionerComposition.hpp	This file contains the PreconditionerComposition class
PreconditionerIfpack.cpp	Ifpack preconditioner
PreconditionerIfpack.hpp	Ifpack preconditioner
PreconditionerLinearSolver.cpp	LinearSolver preconditioner
PreconditionerLinearSolver.hpp	Preconditioner Solver Belos
PreconditionerLSC.cpp	This file contains the PreconditionerLSC class
PreconditionerLSC.hpp	This file contains the PreconditionerLSC class
PreconditionerML.cpp	ML preconditioner
PreconditionerML.hpp	ML preconditioner
PreconditionerPCD.cpp	PreconditionerPCD
PreconditionerPCD.hpp	PreconditionerPCD
PreconditionerSIMPLE.cpp	PreconditionerSIMPLE
PreconditionerSIMPLE.hpp	PreconditionerSIMPLE
PreconditionerTeko.cpp	PreconditionerTeko
PreconditionerTeko.hpp	PreconditionerTeko
PreconditionerYosida.cpp	PreconditionerYosida
PreconditionerYosida.hpp	PreconditionerYosida
QRAdapterBase.hpp	This file contains mother classes of the QRAdapter classes
QRAdapterNeverAdapt.hpp	Fake quadrature rule adapter for a constant quadrature rule
QRKeast.cpp	File for the implementation of the QuadratureRule class
QRKeast.hpp	File for the definition of the quadrature rule defined in the article [Keast85]
QuadratureBoundary.hpp
QuadraturePoint.cpp	Implementation of the quadPoint class, usefull for the quadrature rules
QuadraturePoint.hpp	Definition of the quadPoint class, usefull for the quadrature rules
QuadratureRule.cpp	File for the implementation of the QuadratureRule class
QuadratureRule.hpp	File for the definition of the QuadratureRule class
QuadratureRuleBoundary.hpp	A short description of the file content
QuadratureRuleProvider.cpp	A short description of the file content
QuadratureRuleProvider.hpp	A short description of the file content
RBF_test3dScalar/rbf3d.cpp
RBF_test3dVectorial/rbf3d.cpp
RBFInterpolation.hpp	FSIData - File containing the implementation of Radial Basis Functions suited for interpolation between non-matching grids
RBFlocallyRescaledScalar.hpp	A short description of the file content
RBFlocallyRescaledVectorial.hpp	A short description of the file content
RBFrescaledScalar.hpp	A short description of the file content
RBFrescaledVectorial.hpp	A short description of the file content
ReferenceElement.cpp	Base class for ReferenceFE and GeometricMap
ReferenceElement.hpp	Base class for ReferenceFE and GeometricMap
ReferenceFE.cpp	Base structure for a reference finite element
ReferenceFE.hpp	Base structure for a reference finite element
ReferenceFEHdiv.cpp	Reference finite element for Hdiv space
ReferenceFEHdiv.hpp	Reference finite element for Hdiv space
ReferenceFEHybrid.cpp	Reference finite element for Hdiv space
ReferenceFEHybrid.hpp	Reference finite element for hybrid FEs
ReferenceFEScalar.cpp	Reference finite element for scalar lagrangian FEs
ReferenceFEScalar.hpp	Reference finite element for scalar lagrangian FEs
RegionMesh.cpp	File containing 3D Mesh Class Implementation
RegionMesh.hpp	File containing Mesh Classes
RegionMesh1DBuilders.hpp	Contains methods to generate 1D meshes
RegionMesh1DStructured.hpp	Contains methods to generate 1D meshes
RegionMesh2DStructured.cpp	Contains methods which generate 2D structured meshes
RegionMesh2DStructured.hpp	Contains methods which generate 2D structured meshes
RegionMesh3DStructured.cpp	Contains methods which generate structured meshes
RegionMesh3DStructured.hpp	Contains methods which generate structured meshes
RequestLoopElement.hpp	File containing the classes to determine the kind of loops to be performed
RequestLoopFaceID.hpp	File containing the classes to determine the kind of loops to be performed
RequestLoopVolumeID.hpp	File containing the class to loop over a certain set of volumes
fsi/examples/example_SmoothAneurysm/resistance.cpp	File containing the boundary conditions for the Monolithic Test
navier_stokes/examples/resistanceBCs/resistance.cpp
fsi/examples/example_SmoothAneurysm/resistance.hpp
navier_stokes/examples/resistanceBCs/resistance.hpp
RNM.hpp	Container class for multidimensional arrays
RNMOperator.hpp	Implementation of the operators defined in RNM.hpp
RNMOperatorConstant.hpp	Operator implementation of RNM.hpp
RNMTemplate.hpp	Implementation of the templated method/classes of RNM.hpp
core/testsuite/filter/importExport/RossEthierSteinmanDec.cpp
navier_stokes/function/RossEthierSteinmanDec.cpp
core/testsuite/filter/importExport/RossEthierSteinmanDec.hpp
navier_stokes/function/RossEthierSteinmanDec.hpp
RossEthierSteinmanInc.cpp
RossEthierSteinmanInc.hpp
RowMatrixPreconditioner.hpp
run_MeshExtractor.cpp
RunsForever.cpp
SecondOrderExponentialMaterialNonLinear.hpp	This file contains the definition for the St. Venant Kirchhoff linear material
SetOfFun.cpp	Quadrature Rule test
SetOfFun.hpp	Quadrature Rule test
SobolevNorms.hpp	File containing procedures for computing norm and errors
SolverAmesos.cpp	Solver Amesos
SolverAmesos.hpp	Solver Amesos
SolverAztecOO.cpp	SolverAztecOO
SolverAztecOO.hpp	SolverAztecOO
SolverOperator.cpp	SolverOperator
SolverOperator.hpp	Solver Operator
SolverOperatorAlgo.cpp	SolverOperator
SolverOperatorAlgo.hpp	Solver Operator
SolverPolicyLinearSolver.cpp
SolverPolicyLinearSolver.hpp
Stabilization.hpp	Stabilization - Abstract interface of stabilizations for Navier-Stokes
StabilizationIP.hpp	Interior Penality Stabilization
StabilizationSD.hpp	Streamline diffusion and SUPG stabilization
StabilizationSUPG.cpp
StabilizationSUPG.hpp	SUPG stabilization
StabilizationSUPG_semi_implicit.cpp
StabilizationSUPG_semi_implicit.hpp	SUPG stabilization, semi-implicit case
StabilizationSUPG_semi_implicit_ale.cpp
StabilizationSUPG_semi_implicit_ale.hpp	SUPG stabilization, semi-implicit case
StabilizationSUPGALE.cpp
StabilizationSUPGALE.hpp	SUPG stabilization
StimulusPacingProtocol.cpp	Class for applying cardiac stimulus at a single point according to a pacing protocol
StimulusPacingProtocol.hpp	Class for applying cardiac stimulus at a single point according to a pacing protocol
StimulusPMJ.cpp	Class for applying cardiac stimulus at Purkinje-muscle junctions
StimulusPMJ.hpp	Class for applying cardiac stimulus at Purkinje-muscle junctions
StimulusSingleSource.cpp	Class for applying cardiac stimulus represented by a current at a single point with a given time and duration
StimulusSingleSource.hpp	Class for applying cardiac stimulus represented by a current at a single point with a given time and duration
StringData.cpp	Small classes to manage list data strings
StringData.hpp	Small classes to manage list data strings
strings.h
StringUtility.cpp	String utilities
StringUtility.hpp	String utilities
StructuralAnisotropicConstitutiveLaw.hpp	This file contains an abstract class to implement different kinds of materials for structural dynamic problems (St. Venant-Kirchhoff, Neo-Hookean and Exponential materials right now )
StructuralConstitutiveLaw.hpp	This file contains an abstract class to implement different kinds of materials for structural dynamic problems (St. Venant-Kirchhoff, Neo-Hookean and Exponential materials right now )
StructuralConstitutiveLawData.cpp	DataElasticStructure - File containing a data container for solid problems with elastic structure
StructuralConstitutiveLawData.hpp	DataElasticStructure - File containing a data container for solid problems with elastic structure
StructuralIsotropicConstitutiveLaw.hpp	This file contains an abstract class to implement different kinds of materials for structural dynamic problems (St. Venant-Kirchhoff, Neo-Hookean and Exponential materials right now )
StructuralOperator.hpp	This file contains solvers for different materials
Switch.cpp	Switches class
Switch.hpp	Switches class
tab_check.cpp
tab_check.hpp
test_baremesh.cpp	Test the consistency of the baremesh data structure
test_bdf.cpp
test_bdf.hpp	Simple Fourier test with Dirichlet Boundary condition
test_bdf_2d.cpp
test_ghosthandler.cpp
test_gmsh_parser.cpp
test_interpolate.cpp	Interpolate test
test_interpolate.hpp	Interpolate test
test_meshentitycontainer.cpp	Test MeshEntityContainer class
test_neighborsCircle.cpp
test_neighborsRadius.cpp
test_q2_mesh.cpp	Fair comparison between a Q1 mesh and a Q2 mesh (2D)
test_quadrule.cpp	Quadrature Rule test
test_quadrule.hpp	Quadrature Rule test
test_repeatedmesh2d.cpp
test_repeatedmesh3d.cpp
test_TimeAndExtrapolationHandler.cpp
test_TimeAndExtrapolationHandlerQuadPts.cpp
test_vectorsmall.cpp
testExportImport.cpp	Test for ExporterEnsight
TestFunction.hpp	File containing the Vector Container Test
TestImportExport.hpp	TestImportExport
TestRepeatedMesh.hpp
timeAdvance.cpp
/timeAdvance.cpp
timeAdvance.hpp
/timeAdvance.hpp
TimeAdvance.hpp	File containing a class to deal the time advancing scheme
TimeAdvanceBDF.hpp	File containing a class to deal the time advancing scheme. A class for an easy handling of different order time discretizations/extrapolations BDF based for first and second order problem
TimeAdvanceBDFNavierStokes.hpp	File containing a class for an easy handling of different order time discretizations/extrapolations BDF based specific for the Navier-Stokes problem
TimeAdvanceBDFVariableStep.hpp	File containing a class for an easy handling of different order time discretizations/extrapolations BDF based
TimeAdvanceData.cpp	File containing a class for handling temporal discretization
TimeAdvanceData.hpp	File containing a class for handling temporal discretization
TimeAdvanceNewmark.hpp	File containing a class to deal the time advancing scheme. This class consider -method for first order problems and TimeAdvanceNewmark scheme for the second order problems
TimeAndExtrapolationHandler.cpp
TimeAndExtrapolationHandler.hpp
TimeAndExtrapolationHandlerQuadPts.hpp
TimeData.cpp	File containing a class for handling temporal data
TimeData.hpp	File containing a class for handling temporal discretization
TimeIterationPolicyLinear.hpp
TimeIterationPolicyNonlinear.hpp
TimeIterationPolicyNonlinearIncremental.hpp
TwoLevelOperator.cpp
TwoLevelOperator.hpp
TwoLevelPreconditioner.cpp
TwoLevelPreconditioner.hpp
fsi/examples/application_aortaFSI/ud_functions.cpp
fsi/examples/challenge_VPH/ud_functions.cpp
fsi/examples/example_SmoothAneurysm/ud_functions.cpp	File containing the boundary conditions for the Monolithic Test
fsi/testsuite/fsi_monolithic/ud_functions.cpp	File containing the boundary conditions for the Monolithic Test
fsi/testsuite/fsi_restart/ud_functions.cpp	File containing the boundary conditions for the Monolithic Test
fsi/testsuite/fsi_segregated/ud_functions.cpp
navier_stokes/examples/ETpseudo_fsi/ud_functions.cpp
structure/examples/example_anisotropicTraction/ud_functions.cpp	File containing the boundary conditions for the Monolithic Test
structure/examples/example_bodyForces/ud_functions.cpp	File containing the boundary conditions for the Monolithic Test
structure/examples/example_checkingFibersDirection/ud_functions.cpp	File containing the boundary conditions for the Monolithic Test
structure/examples/example_computePrincipalTensions/ud_functions.cpp	File containing the boundary conditions for the Monolithic Test
structure/examples/example_evaluatingScalarVectorialTensorialQuantitiesUsingETA/ud_functions.cpp	File containing the boundary conditions for the Monolithic Test
structure/testsuite/anisotropicLaw/ud_functions.cpp	File containing the boundary conditions for the Monolithic Test
structure/testsuite/evaluateNodalETA/ud_functions.cpp	File containing the boundary conditions for the Monolithic Test
structure/testsuite/principalTensions/ud_functions.cpp	File containing the boundary conditions for the Monolithic Test
structure/testsuite/structuralsolver/ud_functions.cpp	File containing the boundary conditions for the Monolithic Test
core/testsuite/bdf/ud_functions.hpp
fsi/examples/application_aortaFSI/ud_functions.hpp
fsi/examples/challenge_VPH/ud_functions.hpp
fsi/examples/example_SmoothAneurysm/ud_functions.hpp	File containing the boundary conditions for the Monolithic Test
fsi/testsuite/fsi_monolithic/ud_functions.hpp	File containing the boundary conditions for the Monolithic Test
fsi/testsuite/fsi_restart/ud_functions.hpp	File containing the boundary conditions for the Monolithic Test
fsi/testsuite/fsi_segregated/ud_functions.hpp
fsi_blocks/testsuite/fsi_restart/ud_functions.hpp	File containing the boundary conditions for the Monolithic Test
fsi_blocks/testsuite/fsi_tube/ud_functions.hpp	File containing the boundary conditions for the Monolithic Test
multiscale/testsuite/onedmodel/ud_functions.hpp	File containing function for imposing boundary conditions of the 1D model
navier_stokes/examples/ETpseudo_fsi/ud_functions.hpp
navier_stokes_blocks/examples/example_aorta_semi_implicit/ud_functions.hpp	File containing the boundary conditions for the Monolithic Test
navier_stokes_blocks/examples/example_external_flow/ud_functions.hpp	File containing the functions for BCs
navier_stokes_blocks/testsuite/nonlinear_steady_navier_stokes/ud_functions.hpp	File containing the boundary conditions for the Monolithic Test
navier_stokes_blocks/testsuite/nonlinear_time_dependent_navier_stokes/ud_functions.hpp	File containing the boundary conditions for the Monolithic Test
navier_stokes_blocks/testsuite/semi_implicit_time_dependent_navier_stokes/ud_functions.hpp	File containing the boundary conditions for the Monolithic Test
structure/examples/example_anisotropicTraction/ud_functions.hpp	File containing the boundary conditions for the Monolithic Test
structure/examples/example_bodyForces/ud_functions.hpp	File containing the boundary conditions for the Monolithic Test
structure/examples/example_checkingFibersDirection/ud_functions.hpp	File containing the boundary conditions for the Monolithic Test
structure/examples/example_computePrincipalTensions/ud_functions.hpp	File containing the boundary conditions for the Monolithic Test
structure/examples/example_evaluatingScalarVectorialTensorialQuantitiesUsingETA/ud_functions.hpp	File containing the boundary conditions for the Monolithic Test
structure/testsuite/anisotropicLaw/ud_functions.hpp	File containing the boundary conditions for the Monolithic Test
structure/testsuite/evaluateNodalETA/ud_functions.hpp	File containing the boundary conditions for the Monolithic Test
structure/testsuite/principalTensions/ud_functions.hpp	File containing the boundary conditions for the Monolithic Test
structure/testsuite/structuralsolver/ud_functions.hpp	File containing the boundary conditions for the Monolithic Test
uExactFunctor.hpp
unistd.h
core/testsuite/fe_function/user_fun.cpp
darcy/examples/twophase_impes/user_fun.cpp
darcy/testsuite/basic_test/2d/user_fun.cpp
darcy/testsuite/basic_test/3d/user_fun.cpp
core/testsuite/fe_function/user_fun.hpp
darcy/examples/twophase_impes/user_fun.hpp
darcy/testsuite/basic_test/2d/user_fun.hpp
darcy/testsuite/basic_test/3d/user_fun.hpp
VectorBlockMonolithicEpetra.cpp	Implementation file for VectorBlockMonolithicEpetra
VectorBlockMonolithicEpetra.hpp	File containing the VectorBlockMonolithicEpetra
VectorBlockMonolithicEpetraView.cpp	A short description of the file content
VectorBlockMonolithicEpetraView.hpp	A short description of the file content
VectorBlockStructure.cpp	Implementation file for VectorBlockStructure
VectorBlockStructure.hpp	File containing the VectorBlockStructure class
VectorContainer.hpp	Containers Of Vectors
VectorElemental.cpp	Vector for elementary assembly
VectorElemental.hpp	Vector for elementary assembly
VectorEpetra.cpp	VectorEpetra
VectorEpetra.hpp	VectorEpetra
VectorEpetraStructured.cpp	Implementation file for VectorEpetraStructured
VectorEpetraStructured.hpp	File containing the VectorEpetraStructured class
VectorEpetraStructuredView.cpp	This file contains the the VectorEpetraStructuredView implementation
VectorEpetraStructuredView.hpp	This file contains the the VectorEpetraStructuredView implementation
VectorSmall.cpp
VectorSmall.hpp	This file contains a simple point
VenantKirchhoffElasticHandler.hpp	This file contains an abstract class for Elastic Structures
VenantKirchhoffMaterialLinear.hpp	This file contains the definition for the St. Venant Kirchhoff linear material
VenantKirchhoffMaterialNonLinear.hpp	This file contains the definition of the St. Venant Kirchhoff material
VenantKirchhoffMaterialNonLinearPenalized.hpp	This file contains the definition for the St. Venant Kirchhoff linear material
VenantKirchhoffViscoelasticData.cpp
VenantKirchhoffViscoelasticData.hpp	VenantKirchhoffViscoelasticData - Class to secondorder problem (S. Venant Kirchhoff Viscoelastic)
VenantKirchhoffViscoelasticSolver.hpp	VenantKirchhoffViscoelasticSolver - Class to solve second order problem as linear visco-elastic problem and waves problem
VerifySolutions.cpp	This files contains the description of the VerifySolutions class, which is a helper class for checking results by Computing the mean norm and correlation matrix of vectors
VerifySolutions.hpp	This files contains the description of the VerifySolutions class, which is a helper class for checking results by Computing the mean norm and correlation matrix of vectors
vtkToEnsight.cpp	Test for converting from VTK to Ensight
WallClock.cpp	Wall clock timer class
WallClock.hpp	Wall clock timer class
WallTensionEstimator.hpp	This file contains a class which can be used to evaluate the wall tension in the arterial wall
WallTensionEstimatorCylindricalCoordinates.hpp	This file contains a class which can be used to evaluate the wall tension in the arterial wall
WallTensionEstimatorData.cpp	DataStructure - File containing a data container for wall tension analysis
WallTensionEstimatorData.hpp	DataStructure - File containing a data container for wall tension analysis
winmath.h
winprocess.h
Womersley.cpp	Womersley Analytical Solution
Womersley.hpp	Womersley Analytical Solution
wrong_line_ends_test.cpp
ZeroDimensionalBC.hpp	File containing the zero dimensional BCHandler
ZeroDimensionalBCHandler.hpp	File containing the zero dimensional BCHandler
ZeroDimensionalCircuitData.cpp	File containing a class for 0D model circuit data handling
ZeroDimensionalCircuitData.hpp	File containing a class for 0D model circuit data handling
ZeroDimensionalData.cpp	File containing a class for 0D model data handling
ZeroDimensionalData.hpp	File containing a class for 0D model data handling
ZeroDimensionalDefinitions.hpp	Zero Dimensional Model Global Definitions
ZeroDimensionalFunction.hpp	File containing the zero dimensional bc function
ZeroDimensionalRythmosModelInterface.cpp	Rythmos Model Interface
ZeroDimensionalRythmosModelInterface.hpp	Rythmos Model Interface
ZeroDimensionalRythmosSolverInterface.cpp	Rythmos solver Interface
ZeroDimensionalRythmosSolverInterface.hpp	Rythmos solver Interface
ZeroDimensionalSolver.cpp	Rythmos solver
ZeroDimensionalSolver.hpp	Rythmos solver