- s -

• S_INF() : IonicTenTusscher06
• sameAs() : Problem
• SameShape() : ShapeOfArray
• save() : Exporter< MeshType > , MultiscaleAlgorithm
• saveCPUTime() : MultiscaleSolver
• savePoints() : MeshTransformer< REGIONMESH, RMTYPE >
• saveSolution() : MultiscaleCoupling , MultiscaleModel0D , MultiscaleModel , MultiscaleModelFluid3D , MultiscaleModelFSI1D , MultiscaleModelFSI3D , MultiscaleModelMultiscale , MultiscaleModelWindkessel0D , ZeroDimensionalData
• scalarField() : FEFunction< MeshType, MapType, ReturnType >
• scalarFieldPtr() : FEFunction< MeshType, MapType, ReturnType >
• scalarProduct() : OneDFSIFunctionSolverDefinedCompatibility
• scalingFactorCompliance() : MultiscaleGlobalData
• scalingFactorResistance() : MultiscaleGlobalData
• scheduleDestruction() : FactoryPolicyLifeTimeDefault< T >
• search() : GetPot
• search_failed() : GetPot
• second_der_old_dts() : BDFSecondOrderDerivative
• secondAdjacentElementIdentity() : MeshElementMarked< 0, 1, GeoShape, MC > , MeshElementMarked< 1, 2, GeoShape, MC > , MeshElementMarked< 2, 3, GeoShape, MC >
• secondAdjacentElementPosition() : MeshElementMarked< 0, 1, GeoShape, MC > , MeshElementMarked< 1, 2, GeoShape, MC > , MeshElementMarked< 2, 3, GeoShape, MC >
• secondDerivative() : TimeAdvanceBDF< feVectorType > , TimeAdvanceNewmark< feVectorType >
• SecondOrderExponentialMaterialNonLinear() : SecondOrderExponentialMaterialNonLinear< MeshType >
• secondStageParts() : MeshPartitionTool< MeshType >
• section() : DarcyData< MeshType > , HyperbolicData< Mesh >
• selectionCriterion() : AnisotropicMultimechanismMaterialNonLinear< MeshType > , DistributedHolzapfelMaterialNonLinear< MeshType > , HolzapfelGeneralizedMaterialNonLinear< MeshType > , HolzapfelMaterialNonLinear< MeshType > , StructuralAnisotropicConstitutiveLaw< MeshType >
• SelectionFunctor() : SelectionFunctor
• set() : GetPot , DOFInterface , MatrixContainer< KEYTYPE > , MonolithicBlock , MonolithicBlockComposed , MonolithicBlockComposedDN , MonolithicBlockComposedNN , MonolithicBlockMatrix , Switch
• set_beta() : Newmark
• set_gamma() : Newmark
• set_prefix() : GetPot
• set_timestep() : Newmark
• setA() : IonicAlievPanfilov , RossEthierSteinmanUnsteadyDec , RossEthierSteinmanUnsteadyInc
• setACap() : IonicFox
• setALEBlock() : FSIApplyOperatorNonConforming
• setALEVectorInStencil() : FSIMonolithic , FSIMonolithicGE , FSIMonolithicGI , FSIOperator
• setAlgorithmName() : MultiscaleAlgorithm
• setAlgorithmParameters() : MultiscaleAlgorithm , MultiscaleAlgorithmAitken , MultiscaleAlgorithmBroyden
• setAlpha() : FastAssemblerNS , NavierStokesSolverBlocks , LumpedOperator , Stabilization , StabilizationSUPG , StabilizationSUPG_semi_implicit , StabilizationSUPG_semi_implicit_ale , StabilizationSUPGALE , StructuralConstitutiveLawData
• setalpha() : ZeroDimensionalElementPassiveDiode
• setAlphaf() : FSIOperator
• setAlphafbcf() : FSIOperator
• setAlphafCoef() : FSIOperator
• setAnalysisType() : WallTensionEstimatorData
• setAppliedCurrent() : ElectroETAMonodomainSolver< Mesh, IonicModel > , ElectroIonicModel , HeartFunctors
• setAppliedCurrentFromElectroStimulus() : ElectroETAMonodomainSolver< Mesh, IonicModel > , ElectroIonicModel
• setAppliedCurrentFromFunction() : ElectroETAMonodomainSolver< Mesh, IonicModel > , ElectroIonicModel
• setAppliedCurrentFromFunctionIntra() : ElectroETABidomainSolver< Mesh, IonicModel >
• setAppliedCurrentIntra() : ElectroETABidomainSolver< Mesh, IonicModel >
• setAppliedCurrentIntraPtr() : ElectroETABidomainSolver< Mesh, IonicModel >
• setAppliedCurrentPtr() : ElectroETAMonodomainSolver< Mesh, IonicModel > , ElectroIonicModel
• setAppliedCurrentZygote() : HeartFunctors
• setArea0() : OneDFSIData
• setArea_tn() : OneDFSIPhysics
• setBase() : BCInterfaceData
• setBaseMatrixForPreconditioner() : LinearSolver
• setBaseString() : BCInterfaceData
• setBasis() : RBFInterpolation< mesh_Type >
• setBC() : BCInterface1D< BcHandler, PhysicalSolverType > , HeartBidomainSolver< Mesh, SolverType > , HeartMonodomainSolver< Mesh, SolverType > , OneDFSIBCHandler , BlockJacobiPreconditioner , StructuralOperator< Mesh > , ZeroDimensionalBC , ZeroDimensionalBCHandler , ZeroDimensionalElementSource
• setBCByBoundaryType() : PreconditionerPCD
• setBCFunction() : BCBase , OneDFSIBC , ZeroDimensionalBC
• setBCHandler() : PreconditionerPCD
• setBcType() : ZeroDimensionalBC
• setBCVector() : BCBase
• setBDFcoeff() : BlockJacobiPreconditioner , FSIApplyOperatorNonConforming
• setBDForder() : BDFSecondOrderDerivative , Stabilization , StabilizationSUPG , StabilizationSUPG_semi_implicit , StabilizationSUPG_semi_implicit_ale , StabilizationSUPGALE , TimeAndExtrapolationHandler , TimeAndExtrapolationHandlerQuadPts< DIM >
• setBdQuadRule() : FESpace< MeshType, MapType >
• setBehaviorNegativeWeight() : QuadratureRuleProvider
• setBehaviorNoPreciseExactness() : QuadratureRuleProvider
• setBehaviorTooHighExactness() : QuadratureRuleProvider
• setBeta() : BlockJacobiPreconditioner , FSIApplyOperatorNonConforming , VenantKirchhoffViscoelasticData
• setbeta() : ZeroDimensionalElementPassiveDiode
• setBeta0() : OneDFSIData
• setBetaCoeff() : BCVectorBase
• setBetaCoeffVector() : BCVectorBase
• setBetaFespace() : ADRAssembler< mesh_type, matrix_type, vector_type >
• setBlock() : BlockOperator , FSIApplyOperator , NavierStokesOperator
• setBlockIndex() : ConfinedOperator
• setBlockPreconditioner() : OseenSolver< MeshType, SolverType >
• setBlockStructure() : MatrixBlockMonolithicEpetra< DataType > , MatrixBlockStructure , MatrixEpetraStructured< DataType > , ConfinedOperator , VectorBlockMonolithicEpetra , VectorBlockStructure , VectorEpetraStructured
• setBoundary() : MeshEntity
• setBoundaryCondition() : HyperbolicSolver< Mesh, SolverType >
• setBoundaryConditions() : DarcySolverLinear< MeshType > , FSIHandler , NavierStokesEthierSteinman , NavierStokesSolverBlocks
• setBoundaryFlowRateType() : FSI3DBoundaryFlowRateFunction
• setBoundaryID() : MultiscaleCoupling
• setBufc() : IonicTenTusscher06
• setBufsr() : IonicTenTusscher06
• setBufss() : IonicTenTusscher06
• setBulk() : StructuralConstitutiveLawData
• setCa0() : IonicFox
• setCao() : IonicTenTusscher06
• setCapacitorList() : ZeroDimensionalElementS
• setCapMem() : IonicFox
• setCm() : IonicNoblePurkinje
• setCmdnTot() : IonicFox
• SetCoarseLevelOperator() : TwoLevelOperator
• setCoefficient() : MatrixEpetra< DataType > , VectorEpetra
• setCoefficients() : LinearElasticity , MatrixEpetra< DataType > , NeoHookean , VectorEpetra
• setCoefficientsThinLayer() : LinearElasticity
• setColumnIndex() : ETMatrixElemental
• setCombineMode() : VectorEpetra
• setComm() : ComposedOperator< OperatorType > , ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel > , ExporterHDF5Mesh3D< MeshType > , FSIOperator , MapEpetra , MonolithicBlock , MonolithicBlockComposedDN , BlockJacobiPreconditioner , FSIApplyOperatorNonConforming , PreconditionerComposition , RegionMesh< GeoShapeType, MCType >
• setCommPtr() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setCommunicator() : DarcySolverLinear< MeshType > , Displayer , LinearSolver , MultiscaleAlgorithm , MultiscaleCommunicatorsManager , MultiscaleCoupling , MultiscaleModel , MultiscaleSolver , OneDFSISolver , SolverAztecOO , Stabilization , StabilizationSUPG , StabilizationSUPG_semi_implicit , StabilizationSUPG_semi_implicit_ale , StabilizationSUPGALE
• setComponentsVector() : BCInterfaceData3D
• setConditions() : MonolithicBlock
• setConstant() : Stabilization , StabilizationSUPG , StabilizationSUPG_semi_implicit , StabilizationSUPG_semi_implicit_ale , StabilizationSUPGALE
• setConstants_NavierStokes() : FastAssembler , FastAssemblerNS
• setCoupling() : MultiscaleModel
• setCouplingBlocks() : BlockJacobiPreconditioner
• setCouplingOperators_nonconforming() : BlockJacobiPreconditioner
• setCouplingsNumber() : MultiscaleModel
• setCsqnTot() : IonicFox
• setCurrent() : ZeroDimensionalElement
• setCurrentByTime() : ZeroDimensionalElementCurrentSource
• setCurrentSourceList() : ZeroDimensionalElementS
• setCurrentTime() : sourceVectorialFunctor
• setD() : RossEthierSteinmanUnsteadyDec , RossEthierSteinmanUnsteadyInc
• setDampingFactor() : PreconditionerSIMPLE
• setData() : BCInterfaceFunction< BcHandlerType, PhysicalSolverType > , BCInterfaceFunctionParser< BcHandlerType, PhysicalSolverType > , BCInterfaceFunctionParserFile< BcHandlerType, PhysicalSolverType > , BCInterfaceFunctionParserFileSolver< BcHandlerType, PhysicalSolverType > , BCInterfaceFunctionParserSolver< BcHandlerType, PhysicalSolverType > , BCInterfaceFunctionSolverDefined< BcHandlerType, PhysicalSolverType > , BCInterfaceFunctionSolverDefined< BCHandler, FSIOperator > , BCInterfaceFunctionSolverDefined< BCHandler, StructuralOperator< RegionMesh< LinearTetra > > > , BCInterfaceFunctionSolverDefined< OneDFSIBCHandler, OneDFSISolver > , BCInterfaceFunctionUserDefined< BcHandlerType, PhysicalSolverType > , DarcySolverLinear< MeshType > , FSIOperator , FSISolver , OneDFSIPhysics
• setDataFile() : FSIExactJacobian , FSIFixedPoint
• setDatafile() : FSIHandler
• setDataFile() : FSIOperator
• setDatafile() : FSIApplyOperatorNonConforming
• setDataFluid() : FSIData
• setDataFromGetPot() : Exporter< MeshType > , ExporterHDF5< MeshType > , ExporterVTK< MeshType > , MonolithicBlock , MonolithicBlockComposed , MonolithicBlockComposedDN , MonolithicBlockComposedNN , MonolithicBlockMatrix , MonolithicBlockMatrixRN , Preconditioner , PreconditionerAztecOO , PreconditionerComposed , PreconditionerComposition , PreconditionerIfpack , PreconditionerLinearSolver , PreconditionerML , PreconditionerPCD , PreconditionerSIMPLE , PreconditionerYosida , SolverAmesos , SolverAztecOO , StructuralOperator< Mesh > , VenantKirchhoffViscoelasticSolver< Mesh, SolverType >
• setDataSolid() : FSIData
• setdBeta0dz() : OneDFSIData
• setDefaultBC() : OneDFSIBCHandler
• setDefaultCombineMode() : VectorEpetra
• setDefaultOmega() : NonLinearAitken< VectorType >
• setDelta() : FSI3DBoundaryStressFunction
• setDeltaCurrent() : ZeroDimensionalElement
• setDeltaVoltage() : ZeroDimensionalNode
• setDeltaVoltageByTime() : ZeroDimensionalElementVoltageSource , ZeroDimensionalNodeKnown
• setDensity() : NavierStokesEthierSteinman , NavierStokesProblem< mesh_Type > , OneDFSIData , OseenData , PreconditionerPCD , RossEthierSteinmanUnsteadyDec , RossEthierSteinmanUnsteadyInc , Stabilization , StabilizationSUPG , StabilizationSUPG_semi_implicit , StabilizationSUPG_semi_implicit_ale , StabilizationSUPGALE , StructuralConstitutiveLawData , VenantKirchhoffViscoelasticData
• setDensityWall() : OneDFSIData
• setDerFluidLoadToFluid() : FSIOperator
• setDerFluidLoadToStructure() : FSIOperator
• setDerHarmonicExtensionVelToFluid() : FSIOperator
• setDerStructureDispToSolid() : FSIOperator
• setDiffusionCoefficient() : DataADR
• setDiffusionTensor() : ElectroETAMonodomainSolver< Mesh, IonicModel >
• setDiffusionTensorExtra() : ElectroETABidomainSolver< Mesh, IonicModel >
• setDiffusionTensorIntra() : ElectroETABidomainSolver< Mesh, IonicModel >
• setDimensionShape() : QuadratureRule
• setDiodeList() : ZeroDimensionalElementS
• setDirectionalBase() : BCInterfaceData3D
• setDiscretization() : StabilizationIP< MeshType, DofType >
• setDisplacement() : ElectroETABidomainSolver< Mesh, IonicModel > , WallTensionEstimator< Mesh >
• setDisplacementPtr() : ElectroETABidomainSolver< Mesh, IonicModel >
• setDisplayer() : DarcySolverLinear< MeshType >
• setDomainMap() : aSIMPLEOperator , BlockJacobiPreconditioner , FSIApplyOperatorNonConforming , NavierStokesPreconditionerOperator
• setDualField() : DarcySolverLinear< MeshType >
• setEC() : IonicTenTusscher06
• setEdge() : RegionMesh< GeoShapeType, MCType >
• setEK() : IonicLuoRudyI
• setEK1() : IonicLuoRudyI
• setEKp() : IonicLuoRudyI
• setElement() : RegionMesh< GeoShapeType, MCType > , ZeroDimensionalNodeKnown
• setelementList() : ZeroDimensionalElementS
• setElementListIndex() : ZeroDimensionalNode
• setENa() : IonicLuoRudyI
• setEndTime() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel > , TimeData
• setEpsilon() : IonicAlievPanfilov
• SetEstensionOperator() : TwoLevelOperator
• setEta() : IonicFox
• setEta1() : IonicFitzHughNagumo
• setEta2() : IonicFitzHughNagumo
• setEta3() : IonicFitzHughNagumo
• setETFESpace() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setETFESpacePtr() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setETpressureSpace() : Stabilization , StabilizationSUPG , StabilizationSUPG_semi_implicit , StabilizationSUPG_semi_implicit_ale , StabilizationSUPGALE
• setETvelocitySpace() : Stabilization , StabilizationSUPG , StabilizationSUPG_semi_implicit , StabilizationSUPG_semi_implicit_ale , StabilizationSUPGALE
• setExactness() : QuadratureRule
• setExponent() : normFunctor
• setExporterFluid() : MultiscaleModelFSI3D
• setExporterSolid() : MultiscaleModelFSI3D
• setExportFineScaleVelocity() : NavierStokesSolverBlocks , Stabilization , StabilizationSUPG_semi_implicit_ale
• setExpression() : AssertContext
• setExternalField() : AbstractNumericalFlux< Mesh, SolverType >
• setExternalPressure() : OneDFSIData , StructuralConstitutiveLawData
• setExtrapolatedPressure() : NavierStokesSolverBlocks
• setF() : IonicTenTusscher06
• setFace() : RegionMesh< GeoShapeType, MCType >
• setFarad() : IonicFox
• setFastAssembler() : Stabilization
• setFespace() : ADRAssembler< mesh_type, matrix_type, vector_type >
• setFeSpace() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setFESpace() : OneDFSISolver , PreconditionerPCD , PreconditionerSIMPLE , PreconditionerYosida
• setFeSpacePtr() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setFESpacePtr() : FEField< MeshType, MapType, ReturnType >
• setFeSpaceVelocity() : StabilizationIP< MeshType, DofType >
• setFiber() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setFiberPtr() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setFieldDimension() : DataADR
• setFields() : DarcySolverLinear< MeshType >
• setFileLine() : AssertContext
• setFileName() : Importer
• setFilteringLevel() : BCDataInterpolator
• setFinalTime() : WallTensionEstimatorData
• SetFineLevelOperator() : TwoLevelOperator
• setFixedPointMaxIteration() : DarcySolverNonLinear< MeshType >
• setFixedPointTolerance() : DarcySolverNonLinear< MeshType >
• setFlag() : BCInterfaceData0D , BCInterfaceData3D , Interpolation , MeshEntity
• setFlagStrain() : RossEthierSteinmanUnsteadyDec , RossEthierSteinmanUnsteadyInc
• setFluid() : FSIOperator
• setFluidBC() : FSIMonolithic , FSIOperator , FSISolver
• setFluidBlocks() : BlockJacobiPreconditioner , FSIApplyOperatorNonConforming
• setFluidFlag() : FSI3DBoundaryAreaFunction , FSI3DBoundaryFlowRateFunction
• setFluidInterfaceBoundaryConditions() : FSIHandler
• setFluidLeader() : FSIOperator
• setFluidLoadToStructure() : FSIOperator
• setFluidMomentumOptions() : BlockJacobiPreconditioner
• setFluidPreconditioner() : BlockJacobiPreconditioner
• setFluidVectorInStencil() : FSIMonolithic , FSIOperator
• setFlush() : DebugStream
• setFluxBC() : FSISolver
• setFluxSource() : BCInterface1D< BcHandler, PhysicalSolverType > , BCInterfaceFunctionSolverDefined< OneDFSIBCHandler, OneDFSISolver > , OneDFSIBCHandler , OneDFSIFunctionSolverDefined
• setFormat() : Importer
• setforwardBias() : ZeroDimensionalElementPassiveDiode
• setFSI() : FSISolver
• setFullMap() : ConfinedOperator
• setFullMassMatrix() : ElectroETAMonodomainSolver< Mesh, IonicModel >
• setFullMassMatrixPtr() : ElectroETAMonodomainSolver< Mesh, IonicModel >
• setFullMesh() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setFullMeshPtr() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setFunction() : BCFunctionBase , BCFunctionUDepBase , FSI3DBoundaryAreaFunction , FSI3DBoundaryFlowRateFunction , FSI3DBoundaryStressFunction , OneDFSIFunction , ZeroDimensionalFunction
• setFunctions_Directional() : BCFunctionDirectional
• setFunctions_Robin() : BCFunctionRobin , BCFunctionUDepRobin
• setG() : IonicFitzHughNagumo
• setGamma() : BlockJacobiPreconditioner , FSIApplyOperatorNonConforming , StructuralConstitutiveLawData , TimeAdvanceData , VenantKirchhoffViscoelasticData
• setGammaBeta() : StabilizationIP< MeshType, DofType > , StabilizationSD< MeshType, DofType >
• setGammaDiv() : StabilizationIP< MeshType, DofType > , StabilizationSD< MeshType, DofType >
• setGammaPress() : StabilizationIP< MeshType, DofType >
• setGb() : IonicLuoRudyI
• setGbCa() : IonicTenTusscher06
• setGbNa() : IonicTenTusscher06
• setGCab() : IonicFox
• setGCaL() : IonicTenTusscher06
• setGeometricCenter() : FSI3DBoundaryAreaFunction
• setGeometry() : MultiscaleModel
• setGeometryBlock() : BlockJacobiPreconditioner
• setGeometryOptions() : BlockJacobiPreconditioner
• setgi() : IonicNoblePurkinje
• setGK() : IonicHodgkinHuxley , IonicLuoRudyI
• setGk1() : IonicFox
• setGK1() : IonicLuoRudyI , IonicTenTusscher06
• setGkp() : IonicFox
• setGKp() : IonicLuoRudyI
• setGkr() : IonicFox , IonicTenTusscher06
• setGks() : IonicFox , IonicTenTusscher06
• setGkt0() : IonicFox
• setGL() : IonicHodgkinHuxley
• setGlobalCFE() : EvaluationAddition< EvaluationLType, EvaluationRType > , EvaluationArcTan< EvaluationBaseType > , EvaluationCubicRoot< EvaluationBaseType > , EvaluationDerivativeArcTan< EvaluationBaseType > , EvaluationDeterminant< EvaluationType > , EvaluationDetJacobian< spaceDim > , EvaluationDivI< 2, spaceDim > , EvaluationDivI< 3, spaceDim > , EvaluationDivision< EvaluationLType, EvaluationRType > , EvaluationDivJ< 2, spaceDim > , EvaluationDivJ< 3, spaceDim > , EvaluationDot< EvaluationLType, EvaluationRType > , EvaluationDphiI< fieldDim, spaceDim > , EvaluationDphiI< 1, spaceDim > , EvaluationDphiJ< fieldDim, spaceDim > , EvaluationDphiJ< 1, spaceDim > , EvaluationEmult< EvaluationLType, EvaluationRType > , EvaluationExponential< EvaluationBaseType > , EvaluationExtract1< EvaluationType > , EvaluationExtract2< EvaluationType > , EvaluationExtractScalar< VectorType > , EvaluationFunctor1< FunctorType, ArgumentEvaluationType > , EvaluationFunctor2< FunctorType, Argument1EvaluationType, Argument2EvaluationType > , EvaluationHK< spaceDim > , EvaluationIfCrossed< MeshType, MapType, SpaceDim > , EvaluationInterpolateGradient< MeshType, MapType, SpaceDim, FieldDim > , EvaluationInterpolateGradient< MeshType, MapType, 3, 3 > , EvaluationInterpolateGradient< MeshType, MapType, SpaceDim, 1 > , EvaluationInterpolateLaplacian< MeshType, MapType, SpaceDim, FieldDim > , EvaluationInterpolateLaplacian< MeshType, MapType, SpaceDim, 1 > , EvaluationInterpolateValue< MeshType, MapType, SpaceDim, FieldDim > , EvaluationInterpolateValue< MeshType, MapType, SpaceDim, 1 > , EvaluationInverse< EvaluationType > , EvaluationIsochoricChangeOfVariable< EvaluationBaseType > , EvaluationLaplacianI< fieldDim, spaceDim > , EvaluationLaplacianI< 1, spaceDim > , EvaluationLaplacianJ< fieldDim, spaceDim > , EvaluationLaplacianJ< 1, spaceDim > , EvaluationLogarithm< EvaluationBaseType > , EvaluationMatrix< MatrixDim1, MatrixDim2 > , EvaluationMeas< spaceDim > , EvaluationMeasBDCurrentFE< spaceDim > , EvaluationMetricTensor< spaceDim > , EvaluationMetricVector< spaceDim > , EvaluationMinusTransposed< EvaluationType > , EvaluationNormal< spaceDim > , EvaluationNormalize< EvaluationType > , EvaluationOuterProduct< EvaluationLType, EvaluationRType > , EvaluationPatchArea< MeshType, MapType, SpaceDim, FieldDim > , EvaluationPhiI< testDim > , EvaluationPhiI< 1 > , EvaluationPhiJ< solutionDim > , EvaluationPhiJ< 1 > , EvaluationPosition< spaceDim > , EvaluationPower< EvaluationBaseType > , EvaluationProduct< EvaluationLType, EvaluationRType > , EvaluationReturnAtQuadraturePoints< MeshType, MapType, SpaceDim, FieldDim > , EvaluationReturnAtQuadraturePoints< MeshType, MapType, SpaceDim, 1 > , EvaluationScalar , EvaluationScalarToVector< EvaluationType, FieldDim > , EvaluationSquareRoot< EvaluationBaseType > , EvaluationSubstraction< EvaluationLType, EvaluationRType > , EvaluationSymmetricTensor< EvaluationType > , EvaluationTrace< EvaluationType > , EvaluationTranspose< EvaluationType > , EvaluationVector< VectorDim > , EvaluationVectorFromNonConstantMatrix< EvaluationType, SpaceDim, FieldDim > , EvaluationVectorFromNonConstantScalar< EvaluationType, FieldDim >
• setGlobalData() : MultiscaleCoupling , MultiscaleModel
• setGlobalMatrix() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setGlobalMatrixPtr() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setGlobalRhs() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setGlobalRhsPtrs() : ElectroETAMonodomainSolver< Mesh, IonicModel >
• setGlobalSolution() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setGlobalSolutionPtrs() : ElectroETAMonodomainSolver< Mesh, IonicModel >
• setGNa() : IonicFox , IonicHodgkinHuxley , IonicLuoRudyI , IonicTenTusscher06
• setGNab() : IonicFox
• setGpCa() : IonicTenTusscher06
• setGpK() : IonicTenTusscher06
• setGravity() : FSIHandler
• setGsi() : IonicLuoRudyI
• setGto() : IonicTenTusscher06
• setHandler() : Assert , BCInterface< BcHandler, PhysicalSolverType >
• setHarmonicExtensionBC() : FSIOperator , FSISolver
• setHarmonicExtensionVelToFluid() : FSIOperator
• setHavingSourceTerm() : StructuralOperator< Mesh >
• setHeteroTauClose() : MitchellSchaeffer< Mesh, SolverType >
• setHybridField() : DarcySolverLinear< MeshType >
• setICaHalf() : IonicFox
• setId() : MeshElementBareHandler< BareItemType > , MeshEntity
• setID() : MultiscaleCoupling , MultiscaleModel
• setId() : ZeroDimensionalElement , ZeroDimensionalNode
• setINaK() : IonicFox
• setInductorList() : ZeroDimensionalElementS
• setInitialCondition() : TimeAdvanceBDF< feVectorType > , TimeAdvanceBDFVariableStep< FEVectorType > , TimeAdvanceNewmark< feVectorType >
• setInitialConditions() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setInitialPrimal() : DarcySolverTransient< MeshType >
• setInitialScalar() : HeartFunctors
• setInitialSolution() : HyperbolicSolver< Mesh, SolverType >
• setInitialTime() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel > , TimeData , WallTensionEstimatorData
• setInterfaceMassMatrices() : FSIApplyOperatorNonConforming
• setInterpolants() : FSIApplyOperatorNonConforming
• setInterpolationMethod() : BCDataInterpolator
• setInversePermeability() : DarcySolverLinear< MeshType > , DarcySolverNonLinear< MeshType > , DarcySolverTransientNonLinear< MeshType >
• setInvLinFluidBC() : FSIOperator , FSISolver
• setInvLinSolidBC() : FSIOperator , FSISolver
• setIonicModel() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setIonicModelPtr() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setIpCa() : IonicFox
• setIPCoef() : DataLevelSet
• setIPTreatment() : DataLevelSet
• setIsPartitioned() : RegionMesh< GeoShapeType, MCType >
• setIterationEnd() : WallTensionEstimatorData
• setIterationStart() : WallTensionEstimatorData
• setIthFiberVector() : StructuralAnisotropicConstitutiveLaw< MeshType >
• setJacobianPerturbationArea() : OneDFSIData
• setJacobianPerturbationFlowRate() : OneDFSIData
• setJacobianPerturbationStress() : OneDFSIData
• setK() : IonicAlievPanfilov
• setK0() : IonicFox , IonicLuoRudyI
• setK1() : IonicGoldbeter
• setk1_() : IonicTenTusscher06
• setK2() : IonicGoldbeter
• setk2_() : IonicTenTusscher06
• setK3() : IonicGoldbeter
• setk3() : IonicTenTusscher06
• setK4() : IonicGoldbeter
• setk4() : IonicTenTusscher06
• setKbufc() : IonicTenTusscher06
• setKbufsr() : IonicTenTusscher06
• setKbufss() : IonicTenTusscher06
• setKIn() : IonicFox
• setKmCa() : IonicFox , IonicTenTusscher06
• setKmCmdn() : IonicFox
• setKmCsqn() : IonicFox
• setKmfCa() : IonicFox
• setKmK() : IonicTenTusscher06
• setKmK0() : IonicFox
• setKmK1() : IonicFox
• setKmNa() : IonicFox , IonicTenTusscher06
• setKmNai() : IonicFox , IonicTenTusscher06
• setKmpCa() : IonicFox
• setKmUp() : IonicFox
• setKNaCa() : IonicFox
• setknaca() : IonicTenTusscher06
• setknak() : IonicTenTusscher06
• setknownNodeList() : ZeroDimensionalNodeS
• setknownNodeMap() : ZeroDimensionalNodeS
• setKo() : IonicTenTusscher06
• setKpCa() : IonicTenTusscher06
• setKs() : IonicMinimalModel
• setKSat() : IonicFox
• setksat() : IonicTenTusscher06
• setKso() : IonicMinimalModel
• setKup() : IonicTenTusscher06
• setKw() : IonicMinimalModel
• setLambdaDotSolid() : FSIOperator
• setLambdaFluid() : FSIOperator
• setLambdaSolid() : FSIOperator
• setLambdaSolidOld() : FSIOperator
• setLevel() : AssertContext
• setLevelMsg() : AssertContext
• setLine() : BCInterfaceData1D
• setLinearAlgebraList() : DarcyData< MeshType >
• setLinearFluid() : FSIOperator
• setLinearSolid() : FSIOperator
• setLinearSolver() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel > , OneDFSISolver
• setLinearSolverPtr() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setLinearViscoelasticSolver() : OneDFSISolver
• setLinFluidBC() : FSIOperator , FSISolver
• setLinkSwitch() : RegionMesh< GeoShapeType, MCType >
• setLinSolidBC() : FSIOperator , FSISolver
• setLocalId() : MeshEntity
• setLocalMesh() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setLocalMeshPtr() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setLog() : Assert
• setLumpedMassMatrix() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setMap() : MapEpetra , VectorEpetra
• setMaps() : aSIMPLEOperator , BlockJacobiPreconditioner , FSIApplyOperatorNonConforming
• setMapType() : VectorEpetra
• setMarkerClass() : RegionMesh< GeoShapeType, MCType >
• setMarkerID() : Marker< MarkerIDPolicy > , RegionMesh< GeoShapeType, MCType >
• setMass() : DarcySolverTransient< MeshType >
• setMassMatrix() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setMassMatrixPtr() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setMassTerm() : HyperbolicSolver< Mesh, SolverType >
• setMatrix() : SolverAmesos , SolverAztecOO
• setMaximumExtrapolationOrder() : TimeAndExtrapolationHandler
• setMaxNumEdges() : RegionMesh< GeoShapeType, MCType >
• setMaxNumElements() : RegionMesh< GeoShapeType, MCType >
• setMaxNumFaces() : RegionMesh< GeoShapeType, MCType >
• setMaxNumFacets() : RegionMesh< GeoShapeType, MCType >
• setMaxNumGlobalEdges() : RegionMesh< GeoShapeType, MCType >
• setMaxNumGlobalElements() : RegionMesh< GeoShapeType, MCType >
• setMaxNumGlobalFaces() : RegionMesh< GeoShapeType, MCType >
• setMaxNumGlobalFacets() : RegionMesh< GeoShapeType, MCType >
• setMaxNumGlobalPoints() : RegionMesh< GeoShapeType, MCType >
• setMaxNumGlobalRidges() : RegionMesh< GeoShapeType, MCType >
• setMaxNumGlobalVolumes() : RegionMesh< GeoShapeType, MCType >
• setMaxNumItems() : MeshEntityContainer< DataType, Allocator >
• setMaxNumIterations() : SolverAmesos , SolverAztecOO
• setMaxNumPoints() : RegionMesh< GeoShapeType, MCType >
• setMaxNumRidges() : RegionMesh< GeoShapeType, MCType >
• setMaxNumVolumes() : RegionMesh< GeoShapeType, MCType >
• setmaxsr() : IonicTenTusscher06
• setMembraneCapacitance() : ElectroIonicModel
• setMesh() : StabilizationIP< MeshType, DofType > , MeshColoring , NavierStokesProblem< mesh_Type >
• setMeshData() : DarcyData< MeshType > , HyperbolicData< Mesh >
• setMeshDir() : MeshData
• setMeshFile() : MeshData
• setMeshProcId() : Exporter< MeshType > , ExporterEnsight< MeshType >
• setMeshSize() : Interpolation
• setMeshType() : MeshData
• setMinimizationType() : NonLinearAitken< VectorType >
• setminsr() : IonicTenTusscher06
• setMinusSigmaFluid() : FSIOperator
• setMode() : BCInterfaceData3D
• setModel() : FSI3DBoundaryAreaFunction , FSI3DBoundaryFlowRateFunction , MultiscaleCoupling
• setModelsNumber() : MultiscaleCoupling
• setMomentumOptions() : aSIMPLEOperator , NavierStokesPreconditionerOperator
• setMonolithicMap() : BlockJacobiPreconditioner , FSIApplyOperator , FSIApplyOperatorNonConforming
• setMOrder() : MeshData
• setMu1() : IonicAlievPanfilov
• setMu2() : IonicAlievPanfilov
• setMultimesh() : Exporter< MeshType >
• setMultiscaleModel() : MultiscaleAlgorithm
• setn() : IonicTenTusscher06
• setNa0() : IonicFox
• setNaIn() : IonicFox
• setName() : BCInterfaceData3D , BlockOperator , FSIApplyOperator , NavierStokesOperator , QuadratureRule
• setNameFile() : WallTensionEstimatorData
• setNao() : IonicTenTusscher06
• setNbStimMax() : StimulusPacingProtocol
• setNodeIndex() : ZeroDimensionalElementPassive , ZeroDimensionalElementSource
• setnodeList() : ZeroDimensionalNodeS
• setNodeListIndex() : ZeroDimensionalNode
• setNodesMap() : ExporterEnsight< MeshType >
• setNormal() : FSI3DBoundaryAreaFunction , FSI3DBoundaryFlowRateFunction
• setNu1() : IonicGoldbeter
• setNu2() : IonicGoldbeter
• setNu3() : IonicGoldbeter
• setNu4() : IonicGoldbeter
• setNu5() : IonicGoldbeter
• setNumBEdges() : RegionMesh< GeoShapeType, MCType >
• setNumberOfFamilies() : StructuralAnisotropicConstitutiveLaw< MeshType >
• setNumBFaces() : RegionMesh< GeoShapeType, MCType >
• setNumBoundaryFacets() : RegionMesh< GeoShapeType, MCType >
• setNumBoundaryRidges() : RegionMesh< GeoShapeType, MCType >
• setNumBPoints() : RegionMesh< GeoShapeType, MCType >
• setNumBVertices() : RegionMesh< GeoShapeType, MCType >
• setNumEdges() : RegionMesh< GeoShapeType, MCType >
• setNumElements() : RegionMesh< GeoShapeType, MCType >
• setNumericalFlux() : HyperbolicSolver< Mesh, SolverType >
• setNumFaces() : RegionMesh< GeoShapeType, MCType >
• setNumFacets() : RegionMesh< GeoShapeType, MCType >
• setNumGlobalVertices() : RegionMesh< GeoShapeType, MCType >
• setNumRidges() : RegionMesh< GeoShapeType, MCType >
• setNumVertices() : RegionMesh< GeoShapeType, MCType >
• setNumVolumes() : RegionMesh< GeoShapeType, MCType >
• setOffset() : BCBase , BCHandler
• setOffsets() : MonolithicBlock
• SetofFun() : SetofFun
• setOmegaMax() : NonLinearAitken< VectorType >
• setOmegaMin() : NonLinearAitken< VectorType >
• setOmegaRange() : NonLinearAitken< VectorType >
• setOperator() : FSIExactJacobian::Epetra_ExactJacobian , LinearSolver , ConfinedOperator , InvertibleOperator , SolverOperator , SolverOperatorAlgo , SolverAmesos , SolverAztecOO
• setOptions() : aSIMPLEOperator , BlockJacobiPreconditioner , NavierStokesPreconditionerOperator
• setOrderBDF() : TimeAdvanceData
• setPacingProtocol() : ElectroIonicModel , StimulusPacingProtocol
• setPacingProtocolType() : StimulusPacingProtocol
• setPacingSite() : StimulusPacingProtocol , StimulusSingleSource
• setParameter() : LinearSolver , MatrixContainer< KEYTYPE > , SolverAmesos , ZeroDimensionalElementPassive
• SetParameterList() : ApproximatedInvertibleRowMatrix
• setParameterList() : InvertibleOperator
• SetParameterList() : RowMatrixPreconditioner
• setParameterLists() : FSIHandler
• setParameters() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel > , ElectroStimulus , GraphCutterBase< MeshType > , GraphCutterParMETIS< MeshType > , GraphCutterZoltan< MeshType > , LinearSolver , NavierStokesSolverBlocks , SolverOperator , SolverOperatorAlgo , PreconditionerComposition , PreconditionerPCD , PreconditionerSIMPLE , PreconditionerYosida , SolverAmesos , SolverAztecOO , StimulusPacingProtocol , StimulusPMJ , StimulusSingleSource
• setParametersList() : Preconditioner , SolverAmesos
• setParamsFromGetPot() : KimMoin , RossEthierSteinmanUnsteadyDec , RossEthierSteinmanUnsteadyInc , Womersley
• setPartitionOverlap() : MeshPartitioner< MeshType >
• setPCaK() : IonicFox
• setPCDBlocks() : BlockJacobiPreconditioner
• setPhysicalSolver() : BCInterface3D< BcHandler, PhysicalSolverType > , BCInterface< BcHandler, PhysicalSolverType > , BCInterfaceFunctionParserSolver< BcHandlerType, PhysicalSolverType > , BCInterfaceFunctionSolverDefined< BcHandlerType, PhysicalSolverType > , BCInterfaceFunctionSolverDefined< BCHandler, FSIOperator > , BCInterfaceFunctionSolverDefined< BCHandler, StructuralOperator< RegionMesh< LinearTetra > > > , BCInterfaceFunctionSolverDefined< OneDFSIBCHandler, OneDFSISolver >
• setPhysics() : OneDFSIFlux , OneDFSISource
• setpKNa() : IonicTenTusscher06
• setPleak() : IonicFox
• setPMJAddJunction() : StimulusPMJ
• setPMJFromFile() : StimulusPMJ
• setPnsCa() : IonicFox
• setPoint() : MeshElement< GeoShape, PointType > , MeshElementMarked< 0, 1, GeoShape, MC > , MeshElementMarked< 0, geoDim, GeoShape, MC >
• setPointNeighbors() : NeighborMarker< FlagPolicy >
• setPoints() : QuadratureRule
• setPointWithBoundaryCheck() : MeshElement< GeoShape, PointType >
• setPoisson() : OneDFSIData , StructuralConstitutiveLawData , VenantKirchhoffViscoelasticData
• setPosition() : Norm
• setPostDir() : Exporter< MeshType >
• setPostprocessingDirectory() : OneDFSIData
• setPostprocessingFile() : OneDFSIData
• setPotential() : ElectroETAMonodomainSolver< Mesh, IonicModel >
• setPotentialExtra() : ElectroETABidomainSolver< Mesh, IonicModel >
• setPotentialExtraPtr() : ElectroETABidomainSolver< Mesh, IonicModel >
• setPotentialFromFunction() : ElectroETAMonodomainSolver< Mesh, IonicModel >
• setPotentialFromFunctionExtra() : ElectroETABidomainSolver< Mesh, IonicModel >
• setPotentialFromFunctionTrans() : ElectroETABidomainSolver< Mesh, IonicModel >
• setPotentialPtr() : ElectroETAMonodomainSolver< Mesh, IonicModel >
• setPotentialTrans() : ElectroETABidomainSolver< Mesh, IonicModel >
• setPotentialTransPtr() : ElectroETABidomainSolver< Mesh, IonicModel >
• setPreconditioner() : LinearSolver , InvertibleOperator , SolverOperator , SolverOperatorAlgo , SolverAztecOO , SolverPolicyLinearSolver
• setPreconditionerFromGetPot() : LinearSolver
• setPrefix() : Exporter< MeshType >
• setPrel() : IonicFox
• setPressureMassOptions() : BlockJacobiPreconditioner , NavierStokesPreconditionerOperator
• setPressureSpace() : Stabilization , StabilizationSUPG , StabilizationSUPG_semi_implicit , StabilizationSUPG_semi_implicit_ale , StabilizationSUPGALE
• setPrimalField() : DarcySolverLinear< MeshType >
• setPrimalZeroIteration() : DarcySolverNonLinear< MeshType >
• setProblem() : NavierStokesSolver< Mesh, InitPolicy, TimeIterationPolicy, ExporterPolicy > , OneDFSISolver
• setProblemFolder() : StimulusPMJ
• setQR() : QuadratureRuleBoundary
• setQuadrature() : EvaluationAddition< EvaluationLType, EvaluationRType > , EvaluationArcTan< EvaluationBaseType > , EvaluationCubicRoot< EvaluationBaseType > , EvaluationDerivativeArcTan< EvaluationBaseType > , EvaluationDeterminant< EvaluationType > , EvaluationDetJacobian< spaceDim > , EvaluationDivI< 2, spaceDim > , EvaluationDivI< 3, spaceDim > , EvaluationDivision< EvaluationLType, EvaluationRType > , EvaluationDivJ< 2, spaceDim > , EvaluationDivJ< 3, spaceDim > , EvaluationDot< EvaluationLType, EvaluationRType > , EvaluationDphiI< fieldDim, spaceDim > , EvaluationDphiI< 1, spaceDim > , EvaluationDphiJ< fieldDim, spaceDim > , EvaluationDphiJ< 1, spaceDim > , EvaluationEmult< EvaluationLType, EvaluationRType > , EvaluationExponential< EvaluationBaseType > , EvaluationExtract1< EvaluationType > , EvaluationExtract2< EvaluationType > , EvaluationExtractScalar< VectorType > , EvaluationFunctor1< FunctorType, ArgumentEvaluationType > , EvaluationFunctor2< FunctorType, Argument1EvaluationType, Argument2EvaluationType > , EvaluationHK< spaceDim > , EvaluationIfCrossed< MeshType, MapType, SpaceDim > , EvaluationInterpolateGradient< MeshType, MapType, SpaceDim, FieldDim > , EvaluationInterpolateGradient< MeshType, MapType, 3, 3 > , EvaluationInterpolateGradient< MeshType, MapType, SpaceDim, 1 > , EvaluationInterpolateLaplacian< MeshType, MapType, SpaceDim, FieldDim > , EvaluationInterpolateLaplacian< MeshType, MapType, SpaceDim, 1 > , EvaluationInterpolateValue< MeshType, MapType, SpaceDim, FieldDim > , EvaluationInterpolateValue< MeshType, MapType, SpaceDim, 1 > , EvaluationInverse< EvaluationType > , EvaluationIsochoricChangeOfVariable< EvaluationBaseType > , EvaluationLaplacianI< fieldDim, spaceDim > , EvaluationLaplacianI< 1, spaceDim > , EvaluationLaplacianJ< fieldDim, spaceDim > , EvaluationLaplacianJ< 1, spaceDim > , EvaluationLogarithm< EvaluationBaseType > , EvaluationMatrix< MatrixDim1, MatrixDim2 > , EvaluationMeas< spaceDim > , EvaluationMeasBDCurrentFE< spaceDim > , EvaluationMetricTensor< spaceDim > , EvaluationMetricVector< spaceDim > , EvaluationMinusTransposed< EvaluationType > , EvaluationNormal< spaceDim > , EvaluationNormalize< EvaluationType > , EvaluationOuterProduct< EvaluationLType, EvaluationRType > , EvaluationPatchArea< MeshType, MapType, SpaceDim, FieldDim > , EvaluationPhiI< testDim > , EvaluationPhiI< 1 > , EvaluationPhiJ< solutionDim > , EvaluationPhiJ< 1 > , EvaluationPosition< spaceDim > , EvaluationPower< EvaluationBaseType > , EvaluationProduct< EvaluationLType, EvaluationRType > , EvaluationReturnAtQuadraturePoints< MeshType, MapType, SpaceDim, FieldDim > , EvaluationReturnAtQuadraturePoints< MeshType, MapType, SpaceDim, 1 > , EvaluationScalar , EvaluationScalarToVector< EvaluationType, FieldDim > , EvaluationSquareRoot< EvaluationBaseType > , EvaluationSubstraction< EvaluationLType, EvaluationRType > , EvaluationSymmetricTensor< EvaluationType > , EvaluationTrace< EvaluationType > , EvaluationTranspose< EvaluationType > , EvaluationVector< VectorDim > , EvaluationVectorFromNonConstantMatrix< EvaluationType, SpaceDim, FieldDim > , EvaluationVectorFromNonConstantScalar< EvaluationType, FieldDim > , QuadratureBoundary
• setQuadratureRule() : ETCurrentFE< spaceDim, fieldDim > , ETCurrentBDFE< spaceDim > , ETCurrentFE< spaceDim, fieldDim > , ETCurrentFE< spaceDim, 1 >
• setQuadRule() : CurrentFE , FESpace< MeshType, MapType >
• setQuadRuleForAdvectionMatrix() : ADRAssembler< mesh_type, matrix_type, vector_type >
• setQuadRuleForDiffusionMatrix() : ADRAssembler< mesh_type, matrix_type, vector_type >
• setQuadRuleForMassMatrix() : ADRAssembler< mesh_type, matrix_type, vector_type >
• setQuadRuleForMassRhs() : ADRAssembler< mesh_type, matrix_type, vector_type > , OseenAssembler< meshType, matrixType, vectorType >
• setQuantities() : ImplicitResistance
• setQuantity() : BCInterfaceData1D
• setQuitOnFailure() : LinearSolver
• setR() : IonicFox , IonicTenTusscher06
• setRadius() : RBFInterpolation< mesh_Type > , RBFlocallyRescaledScalar< mesh_Type > , RBFrescaledScalar< mesh_Type > , RBFrescaledVectorial< mesh_Type > , StimulusPacingProtocol , StimulusPMJ , StimulusSingleSource
• setRangeMap() : aSIMPLEOperator , BlockJacobiPreconditioner , FSIApplyOperatorNonConforming , NavierStokesPreconditionerOperator
• setReactionCoefficient() : DataADR
• setReactionTerm() : DarcySolverLinear< MeshType >
• setRecompute() : MonolithicBlock , MonolithicBlockComposed
• setRecomputeMatrix() : OseenSolver< MeshType, SolverType >
• setRecoveryVariable() : WallTensionEstimatorData
• setRecur() : StructuralOperator< Mesh >
• setReducedConductivityBox() : HeartFunctors
• setReducedConductivityCylinder() : HeartFunctors
• setReducedConductivitySphere() : HeartFunctors
• setReferenceArea() : FSI3DBoundaryAreaFunction
• setRefTangents() : ETCurrentBDFE< spaceDim >
• setRegime() : ExporterData< MeshType >
• setRepeatSt() : StimulusPacingProtocol
• setResistanceCoeff() : BCVectorBase
• setResistorList() : ZeroDimensionalElementS
• setRestingCondtions() : ElectroIonicModel
• SetRestrictionOperator() : TwoLevelOperator
• setReusePreconditioner() : LinearSolver , SolverAmesos , SolverAztecOO
• setRhs() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setRhsPtr() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setRhsPtrUnique() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setRhsUnique() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setRhsVector() : BCVectorBase , BCVectorInterface
• setRhsVelocity() : NavierStokesSolverBlocks
• setRightHandSide() : LinearSolver , StructuralOperator< Mesh >
• setRobin() : MonolithicBlock , MonolithicBlockMatrixRN
• setRobinBaseAlpha() : BCInterfaceData3D
• setRobinBaseBeta() : BCInterfaceData3D
• setRobinBC() : FSISolver
• setRobinCoeff() : BCVectorBase
• setRobinCoeffVector() : BCVectorBase
• setRobinData() : MonolithicRobinInterface
• setRobinMatrix() : MonolithicRobinInterface
• setRobinOuterWall() : FSIOperator
• setRobinRhs() : MonolithicRobinInterface
• setRowIndex() : ETMatrixElemental , ETVectorElemental
• SetRowMatrix() : ApproximatedInvertibleRowMatrix , RowMatrixPreconditioner
• setSave() : Exporter< MeshType >
• setScalarSource() : DarcySolverLinear< MeshType >
• setSchurOptions() : aSIMPLEOperator , BlockJacobiPreconditioner , NavierStokesPreconditionerOperator
• setsCouldIntersect() : DOFGatherer< MeshType >
• setSelectionVector() : SelectionFunctor
• setSemiImplicit() : OseenData
• setShapeDerivativesBlocks() : BlockJacobiPreconditioner , FSIApplyOperatorNonConforming
• setSide() : BCInterfaceData1D
• setSigmaFluid() : FSIOperator
• setSigmaSolid() : FSIOperator
• SetSmootherOperator() : TwoLevelOperator
• setSolid() : FSIOperator
• setSolidBC() : FSIMonolithic , FSIOperator , FSISolver , VenantKirchhoffElasticHandler< Mesh >
• setSolidLeader() : FSIOperator
• setSolidLoadToStructure() : FSIOperator
• setSolidVectorInStencil() : FSIMonolithic , FSIOperator
• setSolution() : BCInterface1D< BcHandler, PhysicalSolverType > , BCInterfaceFunctionParserSolver< BcHandlerType, PhysicalSolverType > , BCInterfaceFunctionSolverDefined< OneDFSIBCHandler, OneDFSISolver > , HyperbolicSolver< Mesh, SolverType > , MultiscaleModelFluid3D , OneDFSIBCHandler , OneDFSIFunctionSolverDefined
• setSolutionCFE() : EvaluationAddition< EvaluationLType, EvaluationRType > , EvaluationArcTan< EvaluationBaseType > , EvaluationCubicRoot< EvaluationBaseType > , EvaluationDerivativeArcTan< EvaluationBaseType > , EvaluationDeterminant< EvaluationType > , EvaluationDetJacobian< spaceDim > , EvaluationDivI< 2, spaceDim > , EvaluationDivI< 3, spaceDim > , EvaluationDivision< EvaluationLType, EvaluationRType > , EvaluationDivJ< 2, spaceDim > , EvaluationDivJ< 3, spaceDim > , EvaluationDot< EvaluationLType, EvaluationRType > , EvaluationDphiI< fieldDim, spaceDim > , EvaluationDphiI< 1, spaceDim > , EvaluationDphiJ< fieldDim, spaceDim > , EvaluationDphiJ< 1, spaceDim > , EvaluationEmult< EvaluationLType, EvaluationRType > , EvaluationExponential< EvaluationBaseType > , EvaluationExtract1< EvaluationType > , EvaluationExtract2< EvaluationType > , EvaluationExtractScalar< VectorType > , EvaluationFunctor1< FunctorType, ArgumentEvaluationType > , EvaluationFunctor2< FunctorType, Argument1EvaluationType, Argument2EvaluationType > , EvaluationHK< spaceDim > , EvaluationIfCrossed< MeshType, MapType, SpaceDim > , EvaluationInterpolateGradient< MeshType, MapType, SpaceDim, FieldDim > , EvaluationInterpolateGradient< MeshType, MapType, 3, 3 > , EvaluationInterpolateGradient< MeshType, MapType, SpaceDim, 1 > , EvaluationInterpolateLaplacian< MeshType, MapType, SpaceDim, FieldDim > , EvaluationInterpolateLaplacian< MeshType, MapType, SpaceDim, 1 > , EvaluationInterpolateValue< MeshType, MapType, SpaceDim, FieldDim > , EvaluationInterpolateValue< MeshType, MapType, SpaceDim, 1 > , EvaluationInverse< EvaluationType > , EvaluationIsochoricChangeOfVariable< EvaluationBaseType > , EvaluationLaplacianI< fieldDim, spaceDim > , EvaluationLaplacianI< 1, spaceDim > , EvaluationLaplacianJ< fieldDim, spaceDim > , EvaluationLaplacianJ< 1, spaceDim > , EvaluationLogarithm< EvaluationBaseType > , EvaluationMatrix< MatrixDim1, MatrixDim2 > , EvaluationMeas< spaceDim > , EvaluationMeasBDCurrentFE< spaceDim > , EvaluationMetricTensor< spaceDim > , EvaluationMetricVector< spaceDim > , EvaluationMinusTransposed< EvaluationType > , EvaluationNormal< spaceDim > , EvaluationNormalize< EvaluationType > , EvaluationOuterProduct< EvaluationLType, EvaluationRType > , EvaluationPatchArea< MeshType, MapType, SpaceDim, FieldDim > , EvaluationPhiI< testDim > , EvaluationPhiI< 1 > , EvaluationPhiJ< solutionDim > , EvaluationPhiJ< 1 > , EvaluationPosition< spaceDim > , EvaluationPower< EvaluationBaseType > , EvaluationProduct< EvaluationLType, EvaluationRType > , EvaluationReturnAtQuadraturePoints< MeshType, MapType, SpaceDim, FieldDim > , EvaluationReturnAtQuadraturePoints< MeshType, MapType, SpaceDim, 1 > , EvaluationScalar , EvaluationScalarToVector< EvaluationType, FieldDim > , EvaluationSquareRoot< EvaluationBaseType > , EvaluationSubstraction< EvaluationLType, EvaluationRType > , EvaluationSymmetricTensor< EvaluationType > , EvaluationTrace< EvaluationType > , EvaluationTranspose< EvaluationType > , EvaluationVector< VectorDim > , EvaluationVectorFromNonConstantMatrix< EvaluationType, SpaceDim, FieldDim > , EvaluationVectorFromNonConstantScalar< EvaluationType, FieldDim >
• setSolutionDerivative() : FSIOperator
• setSolver() : Preconditioner , PreconditionerAztecOO , PreconditionerLinearSolver
• setSolversOptions() : FSIHandler , NavierStokesSolverBlocks
• setSolverType() : LinearSolver
• setSourceTerm() : HyperbolicSolver< Mesh, SolverType > , OseenSolver< MeshType, SolverType > , StructuralOperator< Mesh > , VenantKirchhoffViscoelasticSolver< Mesh, SolverType >
• setSourceTerms() : FSISolver
• setSpace() : FESpace< MeshType, MapType >
• setSpaces() : MonolithicBlock
• setStabilization() : DataLevelSet
• setStabilizationCoefficient() : DataADR
• setStabilizationMethod() : DataADR
• setStartingTimeStimulus() : StimulusPacingProtocol , StimulusSingleSource
• setSteady() : DataADR
• setStiffnessMatrix() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setStiffnessMatrixPtr() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setStimDuration() : StimulusSingleSource
• setStimulus() : HeartFunctors
• setStimulusAmplitude() : StimulusPacingProtocol
• setStimulusDuration() : StimulusPacingProtocol
• setStInt() : StimulusPacingProtocol
• setStIntMin() : StimulusPacingProtocol
• setStIntS1S2() : StimulusPacingProtocol
• setStIntS1S2Min() : StimulusPacingProtocol
• setStIntS2S3() : StimulusPacingProtocol
• setStIntS3S4() : StimulusPacingProtocol
• setStokes() : OseenData
• setString() : Parser
• setStrongerMarkerID() : Marker< MarkerIDPolicy >
• setStrongerMarkerIDAtPoint() : MeshElement< GeoShape, PointType >
• setStructureBlock() : BlockJacobiPreconditioner , FSIApplyOperatorNonConforming
• setStructureDispToFluid() : FSIOperator
• setStructureDispToHarmonicExtension() : FSIOperator
• setStructureDispToSolid() : FSIOperator
• setStructureMomentumOptions() : BlockJacobiPreconditioner
• setStructureToFluid() : FSIOperator
• setStructureToFluidParameters() : FSIOperator
• setSubiterateFluidDirichlet() : BlockJacobiPreconditioner
• setSubiterationsMaximumNumber() : MultiscaleAlgorithm
• setSurfaceVolumeRatio() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setT() : IonicTenTusscher06
• setTauClose() : IonicMitchellSchaeffer
• setTaufi() : IonicMinimalModel
• setTauIn() : IonicMitchellSchaeffer
• setTauinf() : IonicMinimalModel
• setTauo1() : IonicMinimalModel
• setTauo2() : IonicMinimalModel
• setTauOpen() : IonicMitchellSchaeffer
• setTauOut() : IonicMitchellSchaeffer
• setTaus1() : IonicMinimalModel
• setTaus2() : IonicMinimalModel
• setTausi() : IonicMinimalModel
• setTauso1() : IonicMinimalModel
• setTauso2() : IonicMinimalModel
• setTauv1() : IonicMinimalModel
• setTauv2() : IonicMinimalModel
• setTauvp() : IonicMinimalModel
• setTauw1() : IonicMinimalModel
• setTauw2() : IonicMinimalModel
• setTauwp() : IonicMinimalModel
• setTemp() : IonicFox
• setTestCFE() : EvaluationAddition< EvaluationLType, EvaluationRType > , EvaluationArcTan< EvaluationBaseType > , EvaluationCubicRoot< EvaluationBaseType > , EvaluationDerivativeArcTan< EvaluationBaseType > , EvaluationDeterminant< EvaluationType > , EvaluationDetJacobian< spaceDim > , EvaluationDivI< 2, spaceDim > , EvaluationDivI< 3, spaceDim > , EvaluationDivision< EvaluationLType, EvaluationRType > , EvaluationDivJ< 2, spaceDim > , EvaluationDivJ< 3, spaceDim > , EvaluationDot< EvaluationLType, EvaluationRType > , EvaluationDphiI< fieldDim, spaceDim > , EvaluationDphiI< 1, spaceDim > , EvaluationDphiJ< fieldDim, spaceDim > , EvaluationDphiJ< 1, spaceDim > , EvaluationEmult< EvaluationLType, EvaluationRType > , EvaluationExponential< EvaluationBaseType > , EvaluationExtract1< EvaluationType > , EvaluationExtract2< EvaluationType > , EvaluationExtractScalar< VectorType > , EvaluationFunctor1< FunctorType, ArgumentEvaluationType > , EvaluationFunctor2< FunctorType, Argument1EvaluationType, Argument2EvaluationType > , EvaluationHK< spaceDim > , EvaluationIfCrossed< MeshType, MapType, SpaceDim > , EvaluationInterpolateGradient< MeshType, MapType, SpaceDim, FieldDim > , EvaluationInterpolateGradient< MeshType, MapType, 3, 3 > , EvaluationInterpolateGradient< MeshType, MapType, SpaceDim, 1 > , EvaluationInterpolateLaplacian< MeshType, MapType, SpaceDim, FieldDim > , EvaluationInterpolateLaplacian< MeshType, MapType, SpaceDim, 1 > , EvaluationInterpolateValue< MeshType, MapType, SpaceDim, FieldDim > , EvaluationInterpolateValue< MeshType, MapType, SpaceDim, 1 > , EvaluationInverse< EvaluationType > , EvaluationIsochoricChangeOfVariable< EvaluationBaseType > , EvaluationLaplacianI< fieldDim, spaceDim > , EvaluationLaplacianI< 1, spaceDim > , EvaluationLaplacianJ< fieldDim, spaceDim > , EvaluationLaplacianJ< 1, spaceDim > , EvaluationLogarithm< EvaluationBaseType > , EvaluationMatrix< MatrixDim1, MatrixDim2 > , EvaluationMeas< spaceDim > , EvaluationMeasBDCurrentFE< spaceDim > , EvaluationMetricTensor< spaceDim > , EvaluationMetricVector< spaceDim > , EvaluationMinusTransposed< EvaluationType > , EvaluationNormal< spaceDim > , EvaluationNormalize< EvaluationType > , EvaluationOuterProduct< EvaluationLType, EvaluationRType > , EvaluationPatchArea< MeshType, MapType, SpaceDim, FieldDim > , EvaluationPhiI< testDim > , EvaluationPhiI< 1 > , EvaluationPhiJ< solutionDim > , EvaluationPhiJ< 1 > , EvaluationPosition< spaceDim > , EvaluationPower< EvaluationBaseType > , EvaluationProduct< EvaluationLType, EvaluationRType > , EvaluationReturnAtQuadraturePoints< MeshType, MapType, SpaceDim, FieldDim > , EvaluationReturnAtQuadraturePoints< MeshType, MapType, SpaceDim, 1 > , EvaluationScalar , EvaluationScalarToVector< EvaluationType, FieldDim > , EvaluationSquareRoot< EvaluationBaseType > , EvaluationSubstraction< EvaluationLType, EvaluationRType > , EvaluationSymmetricTensor< EvaluationType > , EvaluationTrace< EvaluationType > , EvaluationTranspose< EvaluationType > , EvaluationVector< VectorDim > , EvaluationVectorFromNonConstantMatrix< EvaluationType, SpaceDim, FieldDim > , EvaluationVectorFromNonConstantScalar< EvaluationType, FieldDim >
• setTetao() : IonicMinimalModel
• setTetav() : IonicMinimalModel
• setTetavm() : IonicMinimalModel
• setTetaw() : IonicMinimalModel
• setTheta() : TimeAdvanceData
• setThickness() : OneDFSIData , StructuralConstitutiveLawData , VenantKirchhoffViscoelasticData
• setTime() : FSIHandler , TimeData
• setTimeAdvance() : StructuralOperator< Mesh >
• setTimeAdvanceData() : DataLevelSet , OseenData , StructuralConstitutiveLawData , VenantKirchhoffViscoelasticData
• setTimeAdvanceDataALE() : FSIData
• setTimeData() : DarcyData< MeshType > , DataLevelSet , HyperbolicData< Mesh > , OneDFSIData , OseenData , StructuralConstitutiveLawData , VenantKirchhoffViscoelasticData , ZeroDimensionalData
• setTimeDataALE() : FSIData
• setTimeDataPtr() : DataADR
• setTimeIndex() : Exporter< MeshType >
• setTimeIndexStart() : Exporter< MeshType >
• setTimeShortS1S1() : StimulusPacingProtocol
• setTimeStep() : BDFSecondOrderDerivative , ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel > , FastAssemblerNS , NavierStokesSolverBlocks , BlockJacobiPreconditioner , FSIApplyOperatorNonConforming
• setTimestep() : PreconditionerPCD , PreconditionerYosida
• setTimeStep() : Stabilization , StabilizationSUPG , StabilizationSUPG_semi_implicit , StabilizationSUPG_semi_implicit_ale , StabilizationSUPGALE , StimulusPacingProtocol , TimeAdvanceBDFVariableStep< FEVectorType > , TimeAndExtrapolationHandler , TimeAndExtrapolationHandlerQuadPts< DIM > , TimeData
• setTimeStepNumber() : TimeData
• setTolerance() : LinearSolver , MultiscaleAlgorithm , SolverOperator , SolverOperatorAlgo , SolverAmesos , SolverAztecOO
• setTolMaxIteration() : OseenSolver< MeshType, SolverType >
• setTotalCurrent() : StimulusPMJ , StimulusSingleSource
• setTotalDof() : DOF
• setType() : BCBase , BCInterfaceData0D , BCInterfaceData3D , OneDFSIBC
• setunknownNodeList() : ZeroDimensionalNodeS
• setunknownNodeMap() : ZeroDimensionalNodeS
• setUo() : IonicMinimalModel
• setup() : ADRAssembler< mesh_type, matrix_type, vector_type > , ADRAssemblerIP< mesh_type, matrix_type, vector_type >
• setUp() : ALESolver
• setup() : AnisotropicMultimechanismMaterialNonLinear< MeshType > , BCVectorInterface
• setUp() : BlockEpetra_Map
• setup() : DarcyData< MeshType > , DarcySolverLinear< MeshType > , DarcySolverNonLinear< MeshType > , DarcySolverTransient< MeshType > , DarcySolverTransientNonLinear< MeshType > , DataADR , DataLevelSet , DistributedHolzapfelMaterialNonLinear< MeshType > , DOFInterface3Dto2D , DOFInterface3Dto3D , ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel > , ElectroIonicModel , ExponentialMaterialNonLinear< MeshType >
• setUp() : FEField< MeshType, MapType, ReturnType > , FSIcouplingCE
• setup() : FSIData , FSIHandler , FSIMonolithic , FSIMonolithicGI , FSISolver
• setUp() : HarmonicExtensionSolver< Mesh, SolverType >
• setup() : HeartBidomainData , HeartBidomainSolver< Mesh, SolverType > , HeartIonicData , HeartMonodomainData , HeartMonodomainSolver< Mesh, SolverType > , HolzapfelGeneralizedMaterialNonLinear< MeshType > , HolzapfelMaterialNonLinear< MeshType > , HyperbolicData< Mesh > , HyperbolicSolver< Mesh, SolverType > , Interpolation , IonicAlievPanfilov , IonicFitzHughNagumo , LinearElasticity , MatrixBlockMonolithicEpetraView< DataType > , MatrixEpetraStructuredView< DataType > , MeshColoring , MeshData , MeshPartitioner< MeshType > , MeshPartitionerOfflineFSI< MeshType > , FSI3DBoundaryAreaFunction , NavierStokesSolver< Mesh, InitPolicy, TimeIterationPolicy, ExporterPolicy > , NavierStokesSolverBlocks , NeoHookean , NeoHookeanMaterialNonLinear< MeshType > , OneDFSIData
• setUp() : aSIMPLEOperator , BlockOperator , FSIApplyOperator , IdentityOperator , LumpedOperator , NavierStokesOperator , NavierStokesPreconditionerOperator , NullOperator
• setup() : OseenAssembler< meshType, matrixType, vectorType > , OseenData
• setUp() : OseenSolver< MeshType, SolverType > , OseenSolverShapeDerivative< MeshType, SolverType >
• setup() : RBFInterpolation< mesh_Type > , RBFlocallyRescaledScalar< mesh_Type > , RBFlocallyRescaledVectorial< mesh_Type > , RBFrescaledScalar< mesh_Type > , RBFrescaledVectorial< mesh_Type > , SecondOrderExponentialMaterialNonLinear< MeshType > , StructuralAnisotropicConstitutiveLaw< MeshType > , StructuralConstitutiveLaw< MeshType > , StructuralConstitutiveLawData , StructuralIsotropicConstitutiveLaw< MeshType > , StructuralOperator< Mesh > , TimeAdvanceBDF< feVectorType > , TimeAdvanceBDFNavierStokes< VectorType > , TimeAdvanceBDFVariableStep< FEVectorType > , TimeAdvanceData , TimeAdvanceNewmark< feVectorType > , TimeData , VectorBlockMonolithicEpetraView , VectorEpetraStructuredView
• setUp() : VenantKirchhoffElasticHandler< Mesh >
• setup() : VenantKirchhoffMaterialLinear< MeshType > , VenantKirchhoffMaterialNonLinear< MeshType > , VenantKirchhoffMaterialNonLinearPenalized< MeshType > , VenantKirchhoffViscoelasticData , VenantKirchhoffViscoelasticSolver< Mesh, SolverType > , WallTensionEstimator< Mesh > , WallTensionEstimatorCylindricalCoordinates< Mesh > , WallTensionEstimatorData , ZeroDimensionalData , ZeroDimensionalSolver
• setupAlgorithm() : MultiscaleAlgorithm , MultiscaleAlgorithmBroyden
• setUpBC() : FSIFixedPoint
• setupBC() : MultiscaleModelFSI3D
• setupBCOffset() : MultiscaleModelFluid3D
• setupBDF() : FSIOperator
• setupBlockPrec() : FSIMonolithic , FSIMonolithicGI
• setupChrono() : ADRAssembler< mesh_type, matrix_type, vector_type >
• setupCommunicator() : MultiscaleModelFSI3D
• setupCoupling() : MultiscaleCoupling , MultiscaleCouplingBoundaryCondition , MultiscaleCouplingMeanNormalStress , MultiscaleCouplingMeanNormalStressArea , MultiscaleCouplingMeanNormalStressValve , MultiscaleCouplingMeanTotalNormalStress , MultiscaleCouplingMeanTotalNormalStressArea
• setupCouplingVariablesNumber() : MultiscaleCoupling , MultiscaleCouplingBoundaryCondition , MultiscaleCouplingMeanNormalStress , MultiscaleCouplingMeanNormalStressArea , MultiscaleCouplingMeanTotalNormalStress , MultiscaleCouplingMeanTotalNormalStressArea
• setupData() : MultiscaleAlgorithm , MultiscaleAlgorithmAitken , MultiscaleAlgorithmBroyden , MultiscaleAlgorithmExplicit , MultiscaleAlgorithmNewton , MultiscaleCoupling , MultiscaleCouplingBoundaryCondition , MultiscaleModel0D , MultiscaleModel , MultiscaleModelFluid3D , MultiscaleModelFSI1D , MultiscaleModelFSI3D , MultiscaleModelMultiscale , MultiscaleModelWindkessel0D
• setupDOF() : FSIMonolithic , FSIMonolithicGE , FSIOperator , MultiscaleModelFluid3D
• setupExporter() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel > , MultiscaleModelFSI3D
• setupExporterImporter() : MultiscaleModelFluid3D , MultiscaleModelWindkessel0D
• setupExporters() : FSIHandler
• setupFEspace() : FSIExactJacobian , FSIFixedPoint , FSIMonolithic , FSIOperator , MultiscaleModelFluid3D
• setupFESpace() : MultiscaleModelFSI1D
• setupFiberDefinitions() : fibersDirectionList
• setupFiberDirections() : AnisotropicMultimechanismMaterialNonLinear< MeshType > , DistributedHolzapfelMaterialNonLinear< MeshType > , HolzapfelGeneralizedMaterialNonLinear< MeshType > , HolzapfelMaterialNonLinear< MeshType > , StructuralAnisotropicConstitutiveLaw< MeshType >
• setupFibers() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setupFluidSolid() : FSIExactJacobian , FSIFixedPoint , FSIMonolithic , FSIMonolithicGE , FSIMonolithicGI , FSIOperator
• setupGlobalData() : MultiscaleModel0D , MultiscaleModelFluid3D , MultiscaleModelFSI1D , MultiscaleModelFSI3D , MultiscaleModelWindkessel0D
• setupGlobalMatrix() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setupGlobalRhs() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setupGlobalSolution() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setupImporter() : MultiscaleModelFSI3D
• setupInit() : InitPolicyInterpolation< mesh_Type > , InitPolicyProjection< mesh_Type, SolverPolicy > , InitPolicySolver< mesh_Type, TimeIterationPolicy >
• setupInternalConstants() : ETCurrentFE< spaceDim, fieldDim > , ETCurrentBDFE< spaceDim > , ETCurrentFE< spaceDim, fieldDim > , ETCurrentFE< spaceDim, 1 >
• setupLinearModel() : MultiscaleModelFluid3D , MultiscaleModelFSI1D , MultiscaleModelFSI3D
• setupLinearSolver() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setupLumpedMassMatrix() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setupMapMarkersVolumes() : StructuralOperator< Mesh >
• setupMassMatrix() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setupMesh() : MultiscaleModelFluid3D
• setupModel() : MultiscaleModel0D , MultiscaleModel , MultiscaleModelFluid3D , MultiscaleModelFSI1D , MultiscaleModelFSI3D , MultiscaleModelMultiscale , MultiscaleModelWindkessel0D
• setUpNeighbors() : GhostHandler< MeshType >
• setupNode() : OneDFSIFunctionSolverDefined , OneDFSIFunctionSolverDefinedCompatibility
• setupNonLinear() : DarcySolverNonLinear< MeshType >
• setupODEfineScale() : Stabilization , StabilizationSUPG_semi_implicit_ale
• setupP1isoP2SegPattern() : DOFLocalPattern
• setupP1isoP2TriaPattern() : DOFLocalPattern
• setupParser() : BCInterfaceFunctionParser< BcHandlerType, PhysicalSolverType >
• setupPostProc() : NavierStokesSolverBlocks , OseenSolver< MeshType, SolverType >
• setupPotentialExporter() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setupPreconditioner() : SolverAmesos , SolverAztecOO
• setupProblem() : MultiscaleSolver
• setupRBFData() : RBFInterpolation< mesh_Type > , RBFlocallyRescaledScalar< mesh_Type > , RBFlocallyRescaledVectorial< mesh_Type > , RBFrescaledScalar< mesh_Type > , RBFrescaledVectorial< mesh_Type >
• setupSolution() : OneDFSISolver
• setupSolver() : MonolithicBlock , MonolithicBlockMatrix
• setupSolverOperator() : LinearSolver
• setupStandardPattern() : DOFLocalPattern
• setupStiffnessMatrix() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setupStructure() : FSIHandler
• setupSystem() : FSIMonolithic , FSIMonolithicGE , FSIOperator
• setupTangent() : FSI3DBoundaryAreaFunction
• setupTime() : DarcySolverTransient< MeshType >
• setupTimeAdvance() : FSIOperator
• setupVectorsParameters() : ExponentialMaterialNonLinear< MeshType > , NeoHookeanMaterialNonLinear< MeshType > , SecondOrderExponentialMaterialNonLinear< MeshType > , StructuralIsotropicConstitutiveLaw< MeshType > , VenantKirchhoffMaterialLinear< MeshType > , VenantKirchhoffMaterialNonLinear< MeshType > , VenantKirchhoffMaterialNonLinearPenalized< MeshType >
• setUs() : IonicMinimalModel
• setUsedForPreconditioning() : SolverOperator , SolverOperatorAlgo
• setUseGraph() : Stabilization , StabilizationSUPG , StabilizationSUPG_semi_implicit , StabilizationSUPG_semi_implicit_ale , StabilizationSUPGALE
• setUseMinusDivergence() : PreconditionerPCD
• setUseODEfineScale() : Stabilization , StabilizationSUPG_semi_implicit_ale
• setUseShapeDerivatives() : BlockJacobiPreconditioner , FSIApplyOperatorNonConforming , OseenData
• SetUseTranspose() : ComposedOperator< OperatorType > , FSIExactJacobian::Epetra_ExactJacobian
• setUseTranspose() : MatrixEpetra< DataType >
• SetUseTranspose() : ApproximatedInvertibleRowMatrix , aSIMPLEOperator , BlockJacobiPreconditioner , BlockOperator , CompositeOperator , ConfinedOperator , FSIApplyOperator , FSIApplyOperatorNonConforming , IdentityOperator , InvertibleOperator , LinearOperator , LinearOperatorAlgebra , LumpedOperator , NavierStokesOperator , NavierStokesPreconditionerOperator , NullOperator , RowMatrixPreconditioner , SolverOperator , SolverOperatorAlgo , TwoLevelOperator , Preconditioner , PreconditionerComposed , PreconditionerComposition , PreconditionerIfpack , PreconditionerLinearSolver , PreconditionerML
• setUso() : IonicMinimalModel
• setUu() : IonicMinimalModel
• setUw() : IonicMinimalModel
• setValue() : SelectionFunctor
• setVariable() : BCInterfaceFunctionParserSolver< BcHandlerType, PhysicalSolverType > , Parser
• setVariableOne() : ExampleClass
• setVariablePtr() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• setVc() : IonicTenTusscher06
• setVector() : FEField< MeshType, MapType, ReturnType >
• setVectorInStencils() : FSIMonolithic , FSIOperator
• setVectorPtr() : FEField< MeshType, MapType, ReturnType >
• setVectors() : Interpolation
• setVectorSource() : DarcySolverLinear< MeshType >
• setVelocityFESpace() : BlockJacobiPreconditioner
• setVelocitySpace() : Stabilization , StabilizationSUPG , StabilizationSUPG_semi_implicit , StabilizationSUPG_semi_implicit_ale , StabilizationSUPGALE
• setVenousPressure() : OneDFSIData , ZeroDimensionalData
• setVerbose() : GhostHandler< MeshType > , MeshData
• setVerbosity() : ElectroETAMonodomainSolver< Mesh, IonicModel >
• setVerticesCoordinates() : PreconditionerML
• setVGate() : IonicMitchellSchaeffer
• setViscosity() : StabilizationIP< MeshType, DofType > , NavierStokesEthierSteinman , NavierStokesProblem< mesh_Type > , OneDFSIData , OseenData , PreconditionerPCD , RossEthierSteinmanUnsteadyDec , RossEthierSteinmanUnsteadyInc , Stabilization , StabilizationSUPG , StabilizationSUPG_semi_implicit , StabilizationSUPG_semi_implicit_ale , StabilizationSUPGALE
• setVK() : IonicHodgkinHuxley
• setvK() : IonicNoblePurkinje
• setVL() : IonicHodgkinHuxley
• setVleak() : IonicTenTusscher06
• setVmaxup() : IonicTenTusscher06
• setVMyo() : IonicFox
• setVNa() : IonicHodgkinHuxley
• setvNa() : IonicNoblePurkinje
• setVoltage() : ZeroDimensionalNode
• setVoltageByTime() : ZeroDimensionalElementVoltageSource , ZeroDimensionalNodeKnown
• setVoltageSourceList() : ZeroDimensionalElementS
• setVoltageSourceMap() : ZeroDimensionalElementS
• setVolume() : RegionMesh< GeoShapeType, MCType >
• setVolumeCounter() : RegionMesh< GeoShapeType, MCType >
• setVp() : IonicFitzHughNagumo
• setVrel() : IonicTenTusscher06
• setVsr() : IonicFox , IonicTenTusscher06
• setVss() : IonicTenTusscher06
• setVth() : IonicFitzHughNagumo
• setVup() : IonicFox
• setVxfer() : IonicTenTusscher06
• setWeakerMarkerID() : Marker< MarkerIDPolicy >
• setWhere() : ExporterData< MeshType >
• setWinfstart() : IonicMinimalModel
• setYoung() : OneDFSIData , StructuralConstitutiveLawData , VenantKirchhoffViscoelasticData
• setZeroScalar() : HeartFunctors
• shape() : QRKeast< 1 > , QRKeast< 4 > , QRKeast< 6 > , QRKeast< 7 > , ReferenceElement
• shapeDerivatives() : FSIMonolithicGI
• shapeDerivativesPressure() : ALESolver
• shapeDerivativesVelocity() : ALESolver
• ShapeOfArray() : ShapeOfArray
• shift() : BDFSecondOrderDerivative , Newmark , TimeAndExtrapolationHandler , TimeAndExtrapolationHandlerQuadPts< DIM >
• shiftRight() : TimeAdvance< feVectorType > , TimeAdvanceBDF< feVectorType > , TimeAdvanceBDFVariableStep< FEVectorType > , TimeAdvanceNewmark< feVectorType >
• showCurrents() : IonicTenTusscher06
• showDOFIndexMap() : PostProcessingBoundary< MeshType >
• showLinkSwitch() : RegionMesh< GeoShapeType, MCType >
• showMe() : ETCurrentFE< spaceDim, fieldDim > , AnisotropicMultimechanismMaterialNonLinear< MeshType > , ArraySimple< DataType > , BCBase , BCDataInterpolator , BCHandler , BCIdentifierBase , BCIdentifierEssential , BCIdentifierNatural , BCInterfaceData0D , BCInterfaceData1D , BCInterfaceData3D , BCInterfaceData , BCVector , BCVectorBase , BCVectorInterface , BlockEpetra_Map , DataADR , DataLevelSet , StabilizationIP< MeshType, DofType > , DistributedHolzapfelMaterialNonLinear< MeshType > , DOF , DOFGatherer< MeshType > , DOFInterface3Dto2D , DOFInterface , DOFLocalPattern , ElectroIonicModel , ElectroStimulus , ETCurrentFE< spaceDim, fieldDim > , ETCurrentFE< spaceDim, 1 > , ETMatrixElemental , ETVectorElemental , ExampleClass , ExponentialMaterialNonLinear< MeshType > , FSIData , FSISolver , GhostHandler< MeshType > , HeartBidomainData , HeartIonicData , HeartMonodomainData , HolzapfelGeneralizedMaterialNonLinear< MeshType > , HolzapfelMaterialNonLinear< MeshType > , HyperbolicData< Mesh > , Importer , IonicAlievPanfilov , IonicFitzHughNagumo , IonicFox , IonicGoldbeter , IonicHodgkinHuxley , IonicLuoRudyI , IonicMinimalModel , IonicMitchellSchaeffer , IonicNoblePurkinje , IonicTenTusscher06 , LinearSolver , MapEpetra , MapVector< MapType > , Marker< MarkerIDPolicy > , MatrixBlockMonolithicEpetraView< DataType > , MatrixElemental , MatrixEpetra< DataType > , MatrixEpetraStructuredView< DataType > , MatrixSmall< Dim1, Dim2 > , MeshData , MeshElement< GeoShape, PointType > , MeshElementBareHandler< BareItemType > , MeshEntity , MeshPartitioner< MeshType > , MeshPartitionerOfflineFSI< MeshType > , MeshPartitionTool< MeshType > , MeshVertex , FSI3DBoundaryAreaFunction , MultiscaleAlgorithm , MultiscaleAlgorithmAitken , MultiscaleAlgorithmBroyden , MultiscaleCommunicatorsManager , MultiscaleCoupling , MultiscaleGlobalData , MultiscaleModel0D , MultiscaleModel , MultiscaleModelFluid3D , MultiscaleModelFSI1D , MultiscaleModelFSI3D , MultiscaleModelMultiscale , MultiscaleModelWindkessel0D , MultiscaleSolver , NavierStokesCavity , NavierStokesEthierSteinman , NavierStokesProblem< mesh_Type > , NeoHookeanMaterialNonLinear< MeshType > , OneDFSIData , aSIMPLEOperator , BlockJacobiPreconditioner , FSIApplyOperatorNonConforming , OseenData , OseenSolver< MeshType, SolverType > , Preconditioner , PreconditionerAztecOO , PreconditionerIfpack , PreconditionerLinearSolver , PreconditionerML , QuadratureBoundary , QuadratureRule , RegionMesh< GeoShapeType, MCType > , SecondOrderExponentialMaterialNonLinear< MeshType > , SolverAmesos , SolverAztecOO , StabilizationSD< MeshType, DofType > , StimulusPacingProtocol , StimulusPMJ , StimulusSingleSource , StringDataList , StructuralAnisotropicConstitutiveLaw< MeshType > , StructuralConstitutiveLaw< MeshType > , StructuralConstitutiveLawData , StructuralIsotropicConstitutiveLaw< MeshType > , StructuralOperator< Mesh > , Switch , TimeAdvanceBDF< feVectorType > , TimeAdvanceBDFNavierStokes< VectorType > , TimeAdvanceBDFVariableStep< FEVectorType > , TimeAdvanceData , TimeAdvanceNewmark< feVectorType > , TimeData , VectorBlockMonolithicEpetraView , VectorContainer< VectorType, ContainerType > , VectorElemental , VectorEpetra , VectorEpetraStructuredView , VenantKirchhoffMaterialLinear< MeshType > , VenantKirchhoffMaterialNonLinear< MeshType > , VenantKirchhoffMaterialNonLinearPenalized< MeshType > , VenantKirchhoffViscoelasticData , WallTensionEstimatorData , Womersley , ZeroDimensionalCircuitData , ZeroDimensionalData , ZeroDimensionalElement , ZeroDimensionalElementPassive , ZeroDimensionalElementPassiveCapacitor , ZeroDimensionalElementPassiveDiode , ZeroDimensionalElementPassiveInductor , ZeroDimensionalElementPassiveResistor , ZeroDimensionalElementS , ZeroDimensionalElementSource , ZeroDimensionalNode , ZeroDimensionalNodeS , ZeroDimensionalNodeUnknown
• showMeByBdFacet() : DOF
• showMeCouplingVariables() : MultiscaleCoupling
• showMeResiduals() : MultiscaleCoupling
• showMeVariables() : ZeroDimensionalData
• showPatchesMeasure() : PostProcessingBoundary< MeshType >
• showPatchesNormal() : PostProcessingBoundary< MeshType >
• showPatchesPhi() : PostProcessingBoundary< MeshType >
• showValues() : EvaluationInterpolateGradient< MeshType, MapType, SpaceDim, FieldDim > , EvaluationInterpolateGradient< MeshType, MapType, 3, 3 > , EvaluationInterpolateGradient< MeshType, MapType, SpaceDim, 1 > , EvaluationInterpolateLaplacian< MeshType, MapType, SpaceDim, FieldDim > , EvaluationInterpolateLaplacian< MeshType, MapType, SpaceDim, 1 > , EvaluationInterpolateValue< MeshType, MapType, SpaceDim, FieldDim > , EvaluationInterpolateValue< MeshType, MapType, SpaceDim, 1 > , EvaluationPatchArea< MeshType, MapType, SpaceDim, FieldDim > , EvaluationReturnAtQuadraturePoints< MeshType, MapType, SpaceDim, FieldDim > , EvaluationReturnAtQuadraturePoints< MeshType, MapType, SpaceDim, 1 >
• side() : BCInterfaceData1D
• sigmaFluid() : FSIOperator
• sigmaFluidRepeated() : FSIOperator
• sigmaSolid() : FSIOperator
• sigmaSolidRepeated() : FSIOperator
• sigmaX() : WallTensionEstimator< Mesh >
• sigmaY() : WallTensionEstimator< Mesh >
• sigmaZ() : WallTensionEstimator< Mesh >
• signatures() : inspector
• SignFct() : SignFct
• SignFunction() : SignFunction
• silent() : LinearSolver
• Sin() : Sin
• singleIntersect() : DOFGatherer< MeshType >
• singletonPrecSideMap() : BelosOperatorAlgebra
• singletonSolverManagerMap() : BelosOperatorAlgebra
• size() : GetPot , BCHandler
• Size() : ElectroIonicModel
• size() : KN_< R > , KNM_< R > , KNMK_< R > , KNMKL_< R > , VectorContainer< VectorType, ContainerType > , VectorEpetra , VectorSmall< Dim > , VectorSmall< 3 >
• slowIK() : IonicFox
• SmoothDeltaFct() : SmoothDeltaFct
• smoothness() : StructuralConstitutiveLawData
• smoothPressure() : Structure::Private
• solFEType() : DataADR
• solid() : FSIOperator
• solidDensity() : MultiscaleGlobalData
• solidExternalPressure() : MultiscaleGlobalData
• solidGraph() : MeshPartitionerOfflineFSI< MeshType >
• solidInit() : FSIMonolithic
• solidInterfaceFlag() : MeshPartitionerOfflineFSI< MeshType >
• solidInterfaceMap() : FSIOperator
• solidLocalMesh() : FSIOperator
• solidMatrix() : StructuralOperator< Mesh >
• solidMesh() : FSIOperator
• solidPartitions() : MeshPartitionerOfflineFSI< MeshType >
• solidPoissonCoefficient() : MultiscaleGlobalData
• solidTimeAdvance() : FSIOperator
• solidTimeAdvanceMethod() : FSIOperator
• solidTypeAnisotropic() : StructuralConstitutiveLawData
• solidTypeIsotropic() : StructuralConstitutiveLawData
• solidYoungModulus() : MultiscaleGlobalData
• solution() : FSIMonolithic , FSIOperator , HyperbolicSolver< Mesh, SolverType > , Interpolation , MultiscaleModelFluid3D , MultiscaleModelFSI1D , OseenSolver< MeshType, SolverType > , RBFInterpolation< mesh_Type > , RBFlocallyRescaledScalar< mesh_Type > , RBFlocallyRescaledVectorial< mesh_Type > , RBFrescaledScalar< mesh_Type > , RBFrescaledVectorial< mesh_Type > , VenantKirchhoffViscoelasticSolver< Mesh, SolverType >
• solutionExtraPotential() : HeartBidomainSolver< Mesh, SolverType >
• solutionFieldDimension() : DataADR
• solutionGatingCa() : LuoRudy< Mesh, SolverType >
• solutionGatingD() : LuoRudy< Mesh, SolverType >
• solutionGatingF() : LuoRudy< Mesh, SolverType >
• solutionGatingH() : LuoRudy< Mesh, SolverType >
• solutionGatingJ() : LuoRudy< Mesh, SolverType >
• solutionGatingM() : LuoRudy< Mesh, SolverType >
• solutionGatingW() : MitchellSchaeffer< Mesh, SolverType > , RogersMcCulloch< Mesh, SolverType >
• solutionGatingX() : LuoRudy< Mesh, SolverType >
• solutionIntraExtraPotential() : HeartBidomainSolver< Mesh, SolverType >
• solutionrbf() : RBFInterpolation< mesh_Type > , RBFlocallyRescaledScalar< mesh_Type > , RBFlocallyRescaledVectorial< mesh_Type > , RBFrescaledScalar< mesh_Type > , RBFrescaledVectorial< mesh_Type >
• solutionTransmembranePotential() : HeartBidomainSolver< Mesh, SolverType > , HeartMonodomainSolver< Mesh, SolverType >
• solutionTransmembranePotentialExtrapolated() : HeartBidomainSolver< Mesh, SolverType >
• solutionUDimension() : HeartIonicSolver< Mesh, SolverType >
• solve() : DarcySolverLinear< MeshType > , DarcySolverNonLinear< MeshType > , DarcySolverTransient< MeshType > , DarcySolverTransientNonLinear< MeshType > , LinearSolver , MultiscaleModelFSI1D , NavierStokesSolver< Mesh, InitPolicy, TimeIterationPolicy, ExporterPolicy > , SolverAztecOO , SolverPolicyLinearSolver
• solveCai() : IonicTenTusscher06
• solveCaSR() : IonicTenTusscher06
• solveCaSS() : IonicTenTusscher06
• solveD() : IonicTenTusscher06
• solveF() : IonicTenTusscher06
• solveF2() : IonicTenTusscher06
• solveFCaSS() : IonicTenTusscher06
• solveForFlowRate() : MultiscaleModelWindkessel0D
• solveForPressure() : MultiscaleModelWindkessel0D
• solveFSIproblem() : FSIHandler
• solveH() : IonicTenTusscher06
• solveICI() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• solveICIWithFullMass() : ElectroETAMonodomainSolver< Mesh, IonicModel >
• solveInterpolationSystem() : BCDataInterpolator
• solveIonicModel() : HeartIonicSolver< Mesh, SolverType > , LuoRudy< Mesh, SolverType > , MitchellSchaeffer< Mesh, SolverType > , RogersMcCulloch< Mesh, SolverType >
• solveJ() : IonicTenTusscher06
• solveJac() : FSIExactJacobian , FSIFixedPoint , FSIHandler , FSIMonolithic , FSIOperator , NavierStokesSolverBlocks , StructuralOperator< Mesh >
• solveJacobian() : StructuralOperator< Mesh >
• solveKi() : IonicTenTusscher06
• solveLaplacian() : NavierStokesSolverBlocks
• solveLinearFluid() : FSIExactJacobian
• solveLinearModel() : MultiscaleModelFluid3D , MultiscaleModelFSI1D , MultiscaleModelFSI3D , MultiscaleModelWindkessel0D
• solveLinearSolid() : FSIExactJacobian
• solveLinearSystem() : DarcySolverLinear< MeshType > , OneDFSIBC , OseenSolverShapeDerivative< MeshType, SolverType >
• solveM() : IonicTenTusscher06
• solveModel() : MultiscaleModel0D , MultiscaleModel , MultiscaleModelFluid3D , MultiscaleModelFSI1D , MultiscaleModelFSI3D , MultiscaleModelMultiscale , MultiscaleModelWindkessel0D
• solveNai() : IonicTenTusscher06
• solveOneDiffusionStepBDF2() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• solveOneDiffusionStepBE() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• solveOneICIStep() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• solveOneICIStepWithFullMass() : ElectroETAMonodomainSolver< Mesh, IonicModel >
• solveOneReactionStepFE() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• solveOneReactionStepRL() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• solveOneSplittingStep() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• solveOneStep() : IonicTenTusscher06
• solveOneStepGatingVariablesFE() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• solveOneStepGatingVariablesRL() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• solveOneSVIStep() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• solveOneTimeStep() : HyperbolicSolver< Mesh, SolverType >
• solveProblem() : MultiscaleSolver
• solveR() : IonicTenTusscher06
• solver() : LinearSolver , MultiscaleModel0D , MultiscaleModelFSI1D , MultiscaleModelFSI3D , SolverAztecOO
• SolverAmesos() : SolverAmesos
• solverData() : ZeroDimensionalData
• SolverOperator() : SolverOperator
• SolverOperatorAlgo() : SolverOperatorAlgo
• solverPtr() : PreconditionerLinearSolver
• solveRR() : IonicTenTusscher06
• solveS() : IonicTenTusscher06
• solveSplitting() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• solveSVI() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• solveSystem() : HeartBidomainSolver< Mesh, SolverType > , HeartMonodomainSolver< Mesh, SolverType > , MonolithicBlock , MonolithicBlockComposed , MonolithicBlockComposedDN , MonolithicBlockComposedNN , MonolithicBlockMatrix , SolverAmesos , SolverAztecOO
• solveTimeStep() : FSIHandler , NavierStokesSolverBlocks
• solveV() : IonicTenTusscher06
• solveXr1() : IonicTenTusscher06
• solveXr2() : IonicTenTusscher06
• solveXs() : IonicTenTusscher06
• source() : MultiscaleModelFSI1D , OneDFSISolver , OneDFSISource , OneDFSISourceLinear , OneDFSISourceNonLinear
• source10() : OneDFSIData
• source11() : OneDFSIData
• source12() : OneDFSIData
• source20() : OneDFSIData
• source21() : OneDFSIData
• source22() : OneDFSIData
• source_inspector() : source_inspector
• sourceTerm() : OseenSolver< MeshType, SolverType >
• sourceType() : OneDFSIData
• sourceVectorialFunctor() : sourceVectorialFunctor
• spaceDim() : ETFESpace< MeshType, MapType, SpaceDim, FieldDim >
• SphereCounter() : SphereCounter< MeshEntityType, ComparisonPolicyType >
• SphereInterrogator() : SphereInterrogator< MeshEntityType, ComparisonPolicyType >
• splitCommunicator() : MultiscaleCommunicatorsManager
• spy() : MatrixEpetra< DataType > , VectorEpetra
• sqrt() : VectorEpetra
• SquareRoot() : SquareRoot
• SquareRoot_supg_semi_implicit() : SquareRoot_supg_semi_implicit
• SquareRoot_supg_semi_implicit_ale() : SquareRoot_supg_semi_implicit_ale
• SquareRoot_SUPGALE() : SquareRoot_SUPGALE
• stabilization() : DataLevelSet , OseenData , OseenSolverShapeDerivative< MeshType, SolverType >
• Stabilization() : Stabilization
• stabilizationCoefficient() : DataADR
• StabilizationIP() : StabilizationIP< MeshType, DofType >
• stabilizationMethod() : DataADR
• StabilizationSD() : StabilizationSD< MeshType, DofType >
• StabilizationSUPG() : StabilizationSUPG
• StabilizationSUPG_semi_implicit() : StabilizationSUPG_semi_implicit
• StabilizationSUPG_semi_implicit_ale() : StabilizationSUPG_semi_implicit_ale
• StabilizationSUPGALE() : StabilizationSUPGALE
• standardQR() : QRAdapterNeverAdapt , MCQuadrature< MeshType >
• standardS1S2Protocol() : StimulusPacingProtocol
• start() : ExporterData< MeshType > , LifeChrono , LifeChronoFake , WallClock
• startingTimeStimulus() : StimulusPacingProtocol
• state() : BDFSecondOrderDerivative , TimeAndExtrapolationHandler , TimeAndExtrapolationHandlerQuadPts< DIM >
• stateVector() : TimeAdvanceBDFVariableStep< FEVectorType >
• stateVectorBack() : TimeAdvanceBDFVariableStep< FEVectorType >
• staticCondensation() : DarcySolverLinear< MeshType >
• status() : Switch
• steady() : DataADR
• stiffMatrix() : AnisotropicMultimechanismMaterialNonLinear< MeshType > , DistributedHolzapfelMaterialNonLinear< MeshType > , ExponentialMaterialNonLinear< MeshType > , HolzapfelGeneralizedMaterialNonLinear< MeshType > , HolzapfelMaterialNonLinear< MeshType > , NeoHookeanMaterialNonLinear< MeshType > , SecondOrderExponentialMaterialNonLinear< MeshType > , StructuralAnisotropicConstitutiveLaw< MeshType > , StructuralConstitutiveLaw< MeshType > , StructuralIsotropicConstitutiveLaw< MeshType > , VenantKirchhoffMaterialLinear< MeshType > , VenantKirchhoffMaterialNonLinear< MeshType > , VenantKirchhoffMaterialNonLinearPenalized< MeshType >
• stiffness_matrix_no_bc() : LinearElasticity
• stiffnessMatrixPtr() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• stiffVector() : AnisotropicMultimechanismMaterialNonLinear< MeshType > , DistributedHolzapfelMaterialNonLinear< MeshType > , ExponentialMaterialNonLinear< MeshType > , HolzapfelGeneralizedMaterialNonLinear< MeshType > , HolzapfelMaterialNonLinear< MeshType > , NeoHookeanMaterialNonLinear< MeshType > , SecondOrderExponentialMaterialNonLinear< MeshType > , StructuralAnisotropicConstitutiveLaw< MeshType > , StructuralConstitutiveLaw< MeshType > , StructuralIsotropicConstitutiveLaw< MeshType > , VenantKirchhoffMaterialLinear< MeshType > , VenantKirchhoffMaterialNonLinear< MeshType > , VenantKirchhoffMaterialNonLinearPenalized< MeshType >
• stimulus() : HeartFunctors
• stimulusDuration() : StimulusPacingProtocol
• StimulusPacingProtocol() : StimulusPacingProtocol
• StimulusPMJ() : StimulusPMJ
• StimulusSingleSource() : StimulusSingleSource
• StInt() : StimulusPacingProtocol
• stIntMin() : StimulusPacingProtocol
• stIntS1S2() : StimulusPacingProtocol
• stIntS1S2Min() : StimulusPacingProtocol
• stIntS2S3() : StimulusPacingProtocol
• stIntS3S4() : StimulusPacingProtocol
• stop() : LifeChrono , LifeChronoFake , WallClock
• storedArrayPtr() : ExporterData< MeshType >
• storedBPoints() : RegionMesh< GeoShapeType, MCType >
• storedEdges() : RegionMesh< GeoShapeType, MCType >
• storedFaces() : RegionMesh< GeoShapeType, MCType >
• storedPoints() : RegionMesh< GeoShapeType, MCType >
• storedVolumes() : RegionMesh< GeoShapeType, MCType >
• storeSolution() : TimeAdvanceBDFVariableStep< FEVectorType >
• StreamHolder() : StreamHolder
• string() : StringData
• string_tails() : GetPot
• StringData() : StringData
• StringDataList() : StringDataList
• strongerMarkerID() : MarkerIDStandardPolicy
• StructuralAnisotropicConstitutiveLaw() : StructuralAnisotropicConstitutiveLaw< MeshType >
• StructuralConstitutiveLaw() : StructuralConstitutiveLaw< MeshType >
• StructuralConstitutiveLawData() : StructuralConstitutiveLawData
• StructuralIsotropicConstitutiveLaw() : StructuralIsotropicConstitutiveLaw< MeshType >
• StructuralOperator() : StructuralOperator< Mesh >
• Structure() : Structure
• structureDisplacementToFluidDisplacement() : FSIcouplingCE
• structureDisplacementToLambda() : FSIcouplingCE
• structureInterfaceFlag() : FSIData
• structureInterfaceVertexFlag() : FSIData
• structureToInterface() : FSIHandler
• Sub_KN_() : Sub_KN_< R >
• SubArray() : SubArray
• subIterate() : MultiscaleAlgorithm , MultiscaleAlgorithmAitken , MultiscaleAlgorithmBroyden , MultiscaleAlgorithmExplicit , MultiscaleAlgorithmNewton
• subiterationsMaximumNumber() : MultiscaleAlgorithm
• subset() : VectorEpetra
• success() : MeshPartitionTool< MeshType >
• sum() : KN_< R >
• sumIntoCoefficients() : MatrixBlockMonolithicEpetraView< DataType > , MatrixEpetra< DataType > , MatrixEpetraStructuredView< DataType >
• sumIntoGlobalValues() : VectorBlockMonolithicEpetraView , VectorEpetra , VectorEpetraStructuredView
• summed() : ComposedOperator< OperatorType >
• supg_FI_FSI_terms() : FastAssemblerNS
• surfaceVolumeRatio() : ElectroETABidomainSolver< Mesh, IonicModel > , ElectroETAMonodomainSolver< Mesh, IonicModel >
• swap() : ComposedOperator< OperatorType > , MonolithicBlock , MonolithicBlockComposed
• swapCrsMatrix() : MatrixEpetra< DataType >
• swapPoints() : MeshElement< GeoShape, PointType >
• switchErrorMessage() : BCInterfaceFunctionParserSolver< BcHandlerType, PhysicalSolverType > , MultiscaleCoupling
• symmetrizeMatrix() : DarcySolverLinear< MeshType >