IonicSolver - This class implements a ionic model solver. More...

#include <HeartIonicSolver.hpp>

Inheritance diagram for HeartIonicSolver< Mesh, SolverType >:

Collaboration diagram for HeartIonicSolver< Mesh, SolverType >:

Protected Member Functions
UInt	solutionUDimension () const

Type definitions
typedef HeartIonicData	data_Type

typedef Real(*	function_Type) (const Real &, const Real &, const Real &, const Real &, const ID &)

typedef std::function< Real(const markerID_Type &ref, const Real &x, const Real &y, const Real &z, const ID &i) >	functorTauClose_Type

typedef Mesh	mesh_Type

typedef SolverType::matrix_type	matrix_Type

typedef SolverType::vector_type	vector_Type

typedef SolverType::prec_raw_type	precRaw_Type

typedef SolverType::prec_type	prec_Type

Constructors & Destructor
	HeartIonicSolver (const data_Type &dataType, const Mesh &mesh, FESpace< Mesh, MapEpetra > &uFEspace, Epetra_Comm &comm)
	Constructor. More...

virtual	~HeartIonicSolver ()
	Destructor. More...

Methods
const data_Type &	M_data

const Mesh &	M_mesh

FESpace< Mesh, MapEpetra > &	M_uFESpace

Epetra_Comm *	M_comm
	MPI communicator. More...

Int	M_me

MapEpetra	M_localMap
	Map. More...

bool	M_verbose
	Boolean that indicates if output is sent to cout. More...

FESpace< Mesh, MapEpetra > &	recoveryFESpace ()
	Returns the recovery variable FE space. More...

Epetra_Map const &	getRepeatedMapEpetra () const
	Return maps. More...

MapEpetra const &	getMap () const

virtual void	updateRepeated ()=0

virtual void	updateElementSolution (UInt eleIDw)=0
	Update the ionic model elvecs. More...

virtual void	solveIonicModel (const vector_Type &u, const Real timeStep)=0
	Solves the ionic model. More...

virtual void	computeIonicCurrent (Real Capacitance, VectorElemental &elvec, VectorElemental &elvec_u, FESpace< Mesh, MapEpetra > &uFESpace)=0
	Computes the term -1/ u^n (G (1-u^n/vp) (1-u^n/v_th) + eta_1 v^{n+1}) for the PDE righthand side. More...

virtual void	initialize ()=0
	Initialize. More...

Detailed Description

template<typename Mesh, typename SolverType = LifeV::SolverAztecOO>
class LifeV::HeartIonicSolver< Mesh, SolverType >

IonicSolver - This class implements a ionic model solver.

Definition at line 66 of file HeartIonicSolver.hpp.

Member Typedef Documentation

◆ data_Type

typedef HeartIonicData data_Type

Definition at line 73 of file HeartIonicSolver.hpp.

◆ function_Type

typedef Real( * function_Type) (const Real &, const Real &, const Real &, const Real &, const ID &)

Definition at line 75 of file HeartIonicSolver.hpp.

◆ functorTauClose_Type

typedef std::function< Real (const markerID_Type& ref, const Real& x, const Real& y, const Real& z, const ID& i) > functorTauClose_Type

Definition at line 85 of file HeartIonicSolver.hpp.

◆ mesh_Type

typedef Mesh mesh_Type

Definition at line 87 of file HeartIonicSolver.hpp.

◆ matrix_Type

typedef SolverType::matrix_type matrix_Type

Definition at line 89 of file HeartIonicSolver.hpp.

◆ vector_Type

typedef SolverType::vector_type vector_Type

Definition at line 90 of file HeartIonicSolver.hpp.

◆ precRaw_Type

typedef SolverType::prec_raw_type precRaw_Type

Definition at line 92 of file HeartIonicSolver.hpp.

◆ prec_Type

typedef SolverType::prec_type prec_Type

Definition at line 93 of file HeartIonicSolver.hpp.

Constructor & Destructor Documentation

◆ HeartIonicSolver()

HeartIonicSolver	(	const data_Type &	dataType,
		const Mesh &	mesh,
		FESpace< Mesh, MapEpetra > &	uFEspace,
		Epetra_Comm &	comm
	)

Constructor.

Parameters

dataType
mesh
recovery	FE space
Epetra	communicator

Definition at line 196 of file HeartIonicSolver.hpp.

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◆ ~HeartIonicSolver()

virtual ~HeartIonicSolver ( )

inlinevirtual

Destructor.

Definition at line 115 of file HeartIonicSolver.hpp.

Member Function Documentation

◆ recoveryFESpace()

FESpace<Mesh, MapEpetra>& recoveryFESpace ( )

inline

Returns the recovery variable FE space.

Definition at line 124 of file HeartIonicSolver.hpp.

◆ getRepeatedMapEpetra()

Epetra_Map const& getRepeatedMapEpetra ( ) const

inline

Return maps.

Definition at line 130 of file HeartIonicSolver.hpp.

◆ getMap()

MapEpetra const& getMap ( ) const

inline

Definition at line 135 of file HeartIonicSolver.hpp.

◆ updateRepeated()

virtual void updateRepeated ( )

pure virtual

Implemented in LuoRudy< Mesh, SolverType >, RogersMcCulloch< Mesh, SolverType >, and MitchellSchaeffer< Mesh, SolverType >.

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◆ updateElementSolution()

virtual void updateElementSolution ( UInt eleIDw )

pure virtual

Update the ionic model elvecs.

Implemented in LuoRudy< Mesh, SolverType >, RogersMcCulloch< Mesh, SolverType >, and MitchellSchaeffer< Mesh, SolverType >.

◆ solveIonicModel()

virtual void solveIonicModel	(	const vector_Type &	u,
		const Real	timeStep
	)

pure virtual

Solves the ionic model.

Implemented in LuoRudy< Mesh, SolverType >, RogersMcCulloch< Mesh, SolverType >, and MitchellSchaeffer< Mesh, SolverType >.

◆ computeIonicCurrent()

virtual void computeIonicCurrent	(	Real	Capacitance,
		VectorElemental &	elvec,
		VectorElemental &	elvec_u,
		FESpace< Mesh, MapEpetra > &	uFESpace
	)

pure virtual

Computes the term -1/ u^n (G (1-u^n/vp) (1-u^n/v_th) + eta_1 v^{n+1}) for the PDE righthand side.

Implemented in LuoRudy< Mesh, SolverType >, RogersMcCulloch< Mesh, SolverType >, and MitchellSchaeffer< Mesh, SolverType >.

◆ initialize()

virtual void initialize ( )

pure virtual

Initialize.

Implemented in LuoRudy< Mesh, SolverType >, RogersMcCulloch< Mesh, SolverType >, and MitchellSchaeffer< Mesh, SolverType >.

◆ solutionUDimension()

UInt solutionUDimension ( ) const

inlineprotected

Definition at line 181 of file HeartIonicSolver.hpp.

Field Documentation

◆ M_data

const data_Type& M_data

Definition at line 159 of file HeartIonicSolver.hpp.

◆ M_mesh

const Mesh& M_mesh

Definition at line 161 of file HeartIonicSolver.hpp.

◆ M_uFESpace

FESpace<Mesh, MapEpetra>& M_uFESpace

Definition at line 164 of file HeartIonicSolver.hpp.

◆ M_comm

Epetra_Comm* M_comm

MPI communicator.

Definition at line 167 of file HeartIonicSolver.hpp.

◆ M_me

Int M_me

Definition at line 169 of file HeartIonicSolver.hpp.

◆ M_localMap

MapEpetra M_localMap

Map.

Definition at line 172 of file HeartIonicSolver.hpp.

◆ M_verbose

bool M_verbose

Boolean that indicates if output is sent to cout.

Definition at line 175 of file HeartIonicSolver.hpp.

The documentation for this class was generated from the following file:

HeartIonicSolver.hpp

Protected Member Functions

Type definitions

Constructors & Destructor

Methods

Detailed Description

template<typename Mesh, typename SolverType = LifeV::SolverAztecOO> class LifeV::HeartIonicSolver< Mesh, SolverType >

Member Typedef Documentation

◆ data_Type

◆ function_Type

◆ functorTauClose_Type

◆ mesh_Type

◆ matrix_Type

◆ vector_Type

◆ precRaw_Type

◆ prec_Type

Constructor & Destructor Documentation

◆ HeartIonicSolver()

◆ ~HeartIonicSolver()

Member Function Documentation

◆ recoveryFESpace()

◆ getRepeatedMapEpetra()

◆ getMap()

◆ updateRepeated()

◆ updateElementSolution()

◆ solveIonicModel()

◆ computeIonicCurrent()

◆ initialize()

◆ solutionUDimension()

Field Documentation

◆ M_data

◆ M_mesh

◆ M_uFESpace

◆ M_comm

◆ M_me

◆ M_localMap

◆ M_verbose

template<typename Mesh, typename SolverType = LifeV::SolverAztecOO>
class LifeV::HeartIonicSolver< Mesh, SolverType >