#include <HeartIonicSolver.hpp>

Inheritance diagram for MitchellSchaeffer< Mesh, SolverType >:

Collaboration diagram for MitchellSchaeffer< Mesh, SolverType >:

Public Types
typedef HeartIonicSolver< Mesh, SolverType >::data_Type	data_Type

typedef HeartIonicSolver< Mesh, SolverType >::vector_Type	vector_Type

typedef HeartIonicSolver< Mesh, SolverType >::function_Type	function_Type

typedef HeartIonicSolver< Mesh, SolverType >::functorTauClose_Type	functorTauClose_Type

Public Types inherited from HeartIonicSolver< Mesh, SolverType >
typedef HeartIonicData	data_Type

typedef Real(*	function_Type) (const Real &, const Real &, const Real &, const Real &, const ID &)

typedef std::function< Real(const markerID_Type &ref, const Real &x, const Real &y, const Real &z, const ID &i) >	functorTauClose_Type

typedef Mesh	mesh_Type

typedef SolverType::matrix_type	matrix_Type

typedef SolverType::vector_type	vector_Type

typedef SolverType::prec_raw_type	precRaw_Type

typedef SolverType::prec_type	prec_Type

Public Member Functions
	MitchellSchaeffer (const data_Type &dataType, const Mesh &mesh, FESpace< Mesh, MapEpetra > &uFEspace, Epetra_Comm &comm)
	Constructor. More...

virtual	~MitchellSchaeffer ()

void	updateRepeated ()

void	updateElementSolution (UInt eleID)
	Update the ionic model elvecs. More...

void	solveIonicModel (const vector_Type &u, const Real timeStep)
	Solves the ionic model. More...

void	computeIonicCurrent (Real Capacitance, VectorElemental &elvec, VectorElemental &elvec_u, FESpace< Mesh, MapEpetra > &uFESpace)
	Computes the term -1/ u^n (G (1-u^n/vp) (1-u^n/v_th) + eta_1 v^{n+1}) for the PDE righthand side. More...

const vector_Type &	solutionGatingW () const

void	initialize ()
	Initialize. More...

void	setHeteroTauClose (functorTauClose_Type)

Real	functorTauClose (const markerID_Type &ref, const Real &x, const Real &y, const Real &z, const ID &i) const

Public Member Functions inherited from HeartIonicSolver< Mesh, SolverType >
	HeartIonicSolver (const data_Type &dataType, const Mesh &mesh, FESpace< Mesh, MapEpetra > &uFEspace, Epetra_Comm &comm)
	Constructor. More...

virtual	~HeartIonicSolver ()
	Destructor. More...

FESpace< Mesh, MapEpetra > &	recoveryFESpace ()
	Returns the recovery variable FE space. More...

Epetra_Map const &	getRepeatedMapEpetra () const
	Return maps. More...

MapEpetra const &	getMap () const

Protected Attributes
vector_Type	M_solutionGatingW
	Global solution _w. More...

vector_Type	M_solutionGatingWRepeated

VectorElemental	M_elvec

UInt	M_BDForder

TimeAdvanceBDF< vector_Type >	M_BDFW

functorTauClose_Type	M_tauClose

Additional Inherited Members
Data Fields inherited from HeartIonicSolver< Mesh, SolverType >
const data_Type &	M_data

const Mesh &	M_mesh

FESpace< Mesh, MapEpetra > &	M_uFESpace

Epetra_Comm *	M_comm
	MPI communicator. More...

Int	M_me

MapEpetra	M_localMap
	Map. More...

bool	M_verbose
	Boolean that indicates if output is sent to cout. More...

Protected Member Functions inherited from HeartIonicSolver< Mesh, SolverType >
UInt	solutionUDimension () const

Detailed Description

template<typename Mesh, typename SolverType = LifeV::SolverAztecOO>
class LifeV::MitchellSchaeffer< Mesh, SolverType >

Definition at line 212 of file HeartIonicSolver.hpp.

Member Typedef Documentation

◆ data_Type

typedef HeartIonicSolver<Mesh, SolverType>::data_Type data_Type

Definition at line 215 of file HeartIonicSolver.hpp.

◆ vector_Type

typedef HeartIonicSolver<Mesh, SolverType>::vector_Type vector_Type

Definition at line 216 of file HeartIonicSolver.hpp.

◆ function_Type

typedef HeartIonicSolver<Mesh, SolverType>::function_Type function_Type

Definition at line 217 of file HeartIonicSolver.hpp.

◆ functorTauClose_Type

typedef HeartIonicSolver<Mesh, SolverType>::functorTauClose_Type functorTauClose_Type

Definition at line 218 of file HeartIonicSolver.hpp.

Constructor & Destructor Documentation

◆ MitchellSchaeffer()

MitchellSchaeffer	(	const data_Type &	dataType,
		const Mesh &	mesh,
		FESpace< Mesh, MapEpetra > &	uFEspace,
		Epetra_Comm &	comm
	)

Constructor.

Definition at line 274 of file HeartIonicSolver.hpp.

Here is the caller graph for this function:

◆ ~MitchellSchaeffer()

~MitchellSchaeffer ( )

virtual

Definition at line 290 of file HeartIonicSolver.hpp.

Member Function Documentation

◆ updateRepeated()

void updateRepeated ( )

virtual

Implements HeartIonicSolver< Mesh, SolverType >.

Definition at line 295 of file HeartIonicSolver.hpp.

◆ updateElementSolution()

void updateElementSolution ( UInt eleIDw )

virtual

Update the ionic model elvecs.

Filling local elvec_w with recovery variable values in the nodes

Implements HeartIonicSolver< Mesh, SolverType >.

Definition at line 301 of file HeartIonicSolver.hpp.

◆ solveIonicModel()

void solveIonicModel	(	const vector_Type &	u,
		const Real	timeStep
	)

virtual

Solves the ionic model.

Solving : ((v_max-v_min)^{-2} - w )/tau_open if u < vcrit dw/dt ={ -w/tau_close if u > vcrit

Implements HeartIonicSolver< Mesh, SolverType >.

Definition at line 329 of file HeartIonicSolver.hpp.

◆ computeIonicCurrent()

void computeIonicCurrent	(	Real	Capacitance,
		VectorElemental &	elvec,
		VectorElemental &	elvec_u,
		FESpace< Mesh, MapEpetra > &	uFESpace
	)

virtual

Computes the term -1/ u^n (G (1-u^n/vp) (1-u^n/v_th) + eta_1 v^{n+1}) for the PDE righthand side.

Implements HeartIonicSolver< Mesh, SolverType >.

Definition at line 378 of file HeartIonicSolver.hpp.

◆ solutionGatingW()

const vector_Type& solutionGatingW ( ) const

inline

Definition at line 238 of file HeartIonicSolver.hpp.

◆ initialize()

void initialize ( )

virtual

Initialize.

Implements HeartIonicSolver< Mesh, SolverType >.

Definition at line 399 of file HeartIonicSolver.hpp.

◆ setHeteroTauClose()

void setHeteroTauClose ( functorTauClose_Type fct )

Definition at line 314 of file HeartIonicSolver.hpp.

◆ functorTauClose()

Real functorTauClose	(	const markerID_Type &	ref,
		const Real &	x,
		const Real &	y,
		const Real &	z,
		const ID &	i
	)		const

Definition at line 320 of file HeartIonicSolver.hpp.

Field Documentation

◆ M_solutionGatingW

vector_Type M_solutionGatingW

protected

Global solution _w.

Definition at line 256 of file HeartIonicSolver.hpp.

◆ M_solutionGatingWRepeated

vector_Type M_solutionGatingWRepeated

protected

Definition at line 257 of file HeartIonicSolver.hpp.

◆ M_elvec

VectorElemental M_elvec

protected

Definition at line 258 of file HeartIonicSolver.hpp.

◆ M_BDForder

UInt M_BDForder

protected

Definition at line 259 of file HeartIonicSolver.hpp.

◆ M_BDFW

TimeAdvanceBDF<vector_Type> M_BDFW

protected

Definition at line 260 of file HeartIonicSolver.hpp.

◆ M_tauClose

functorTauClose_Type M_tauClose

protected

Definition at line 261 of file HeartIonicSolver.hpp.

The documentation for this class was generated from the following file:

HeartIonicSolver.hpp

Public Types

Public Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

template<typename Mesh, typename SolverType = LifeV::SolverAztecOO> class LifeV::MitchellSchaeffer< Mesh, SolverType >

Member Typedef Documentation

◆ data_Type

◆ vector_Type

◆ function_Type

◆ functorTauClose_Type

Constructor & Destructor Documentation

◆ MitchellSchaeffer()

◆ ~MitchellSchaeffer()

Member Function Documentation

◆ updateRepeated()

◆ updateElementSolution()

◆ solveIonicModel()

◆ computeIonicCurrent()

◆ solutionGatingW()

◆ initialize()

◆ setHeteroTauClose()

◆ functorTauClose()

Field Documentation

◆ M_solutionGatingW

◆ M_solutionGatingWRepeated

◆ M_elvec

◆ M_BDForder

◆ M_BDFW

◆ M_tauClose

template<typename Mesh, typename SolverType = LifeV::SolverAztecOO>
class LifeV::MitchellSchaeffer< Mesh, SolverType >