#include <HeartMonodomainData.hpp>

Inheritance diagram for HeartMonodomainData:

Collaboration diagram for HeartMonodomainData:

Private Attributes
region_Type	M_reducedConductivityBox

region_Type	M_reducedConductivityCylinder

region_Type	M_reducedConductivitySphere

bool	M_hasFibers

UInt	M_verbose

Int	M_heartDiffusionFactor

Real	M_diffusivity

Real	M_longitudinalConductivity

Real	M_membraneCapacitance

Real	M_transversalConductivity

Real	M_volumeSurfaceRatio

Real	M_conductivityRatio

std::string	M_fibersDirectory

std::string	M_fibersFile

std::string	M_postProcessingDirectory

std::string	M_uOrder
	full name More...

Public Types
typedef std::function< Real(Real const &x, Real const &y, Real const &z, Real const &t, ID const &id, Real const &) >	region_Type

Constructor & Destructor
	HeartMonodomainData ()
	Constructors. More...

	HeartMonodomainData (std::shared_ptr< HeartFunctors > heart)

	HeartMonodomainData (const HeartMonodomainData &dataMonodomain)

virtual	~HeartMonodomainData ()

Operators
HeartMonodomainData &	operator= (const HeartMonodomainData &dataMonodomain)

Methods
void	showMe (std::ostream &output=std::cout)
	output: show the data used for the simulation More...

Set Methods
void	setup (const GetPot &dataFile)
	external setup: set all the data for the simulation More...

Get Methods
const region_Type &	reducedConductivityBox () const

const region_Type &	reducedConductivityCylinder () const

const region_Type &	reducedConductivitySphere () const

const UInt &	verbose () const
	verbose More...

std::string	uOrder () const
	FE space order. More...

const Real &	volumeSurfaceRatio () const
	Chi. More...

const Real &	conductivityRatio () const
	lambda, key parameter in the derivation of Monodomain equations More...

std::string	fibersFile () const
	fiber File More...

const Int &	heartDiffusionFactor () const

bool	hasFibers () const

const Real &	longitudinalConductivity () const
	sigma_l More...

const Real &	transversalConductivity () const
	sigma_t More...

const Real &	membraneCapacitance () const
	Cm. More...

const Real &	diffusivity () const
	D. More...

std::string	postProcessingDirectory () const
	Post_dir. More...

Additional Inherited Members
Public Member Functions inherited from MeshData
	MeshData ()
	Empty Constructor. More...

	MeshData (const GetPot &dataFile, const std::string &section="space_discretization")
	Constructor. More...

	MeshData (const MeshData &meshData)
	Copy constructor. More...

virtual	~MeshData ()
	Virtual destructor. More...

void	setup (const GetPot &dataFile, const std::string &section)
	Read the dataFile and set all the members. More...

void	setup (const Teuchos::ParameterList &meshParameters)
	Set all members using a Teuchos ParameterList. More...

virtual void	showMe (std::ostream &output=std::cout) const
	Display the values. More...

void	setMeshDir (const std::string &dir)

void	setMeshFile (const std::string &file)

void	setMeshType (const std::string &type)

void	setMOrder (const std::string &order)

void	setVerbose (const bool &isVerbose)

const std::string &	meshDir () const

const std::string &	meshFile () const

const std::string &	meshType () const

const std::string &	mOrder () const

const bool &	verbose () const

Public Member Functions inherited from TimeData
	TimeData ()
	Empty Constructor. More...

	TimeData (const GetPot &dataFile, const std::string &section="time_discretization")
	Constructor. More...

	TimeData (const TimeData &TimeData)
	Copy constructor. More...

virtual	~TimeData ()
	Virtual destructor. More...

void	setup (const GetPot &dfile, const std::string &section="time_discretization")
	Read the dataFile and set all the internal quantities. More...

void	updateTime ()
	Update the time by a timestep. More...

bool	canAdvance ()
	Return if we can make a new timestep. More...

bool	isFirstTimeStep ()
	Return if it is the initial time step. More...

bool	isLastTimeStep ()
	Return if it is the last time step. More...

void	showMe (std::ostream &output=std::cout) const
	Display general information about the content of the class. More...

Real	round (const Real &n, const Int &decimal=10) const

void	setInitialTime (const Real &initialTime)
	Set the initial time step. More...

void	setEndTime (const Real &endTime)
	Set the final time step. More...

void	setTime (const Real &time)
	Set the present time of the simulation. More...

void	setTimeStep (const Real &timeStep)
	Set the initial time step. More...

void	setTimeStepNumber (const UInt &timeStepNumber)
	Set the time step number. More...

const Real &	initialTime () const
	Get the initial time step. More...

const Real &	endTime () const
	Get the final time step. More...

const Real &	periodTime () const
	Get the period. More...

const Real &	time () const
	Get the present time. More...

Real	leftTime () const
	Get the time left. More...

Real	elapsedTime () const
	Get the elapsed time. More...

Real	inCycleTime () const
	Get the present time shifted inside the first cycle (i.e. More...

Real	previousTime () const
	Get the previous time. More...

Real	nextTime () const
	Get the next time. More...

const Real &	timeStep () const
	Get the time step used for advancing. More...

const UInt &	timeStepNumber () const
	Get the number of time step performed. More...

Detailed Description

Definition at line 54 of file HeartMonodomainData.hpp.

Member Typedef Documentation

◆ region_Type

typedef std::function< Real ( Real const& x, Real const& y, Real const& z, Real const& t, ID const& id, Real const&) > region_Type

Definition at line 69 of file HeartMonodomainData.hpp.

Constructor & Destructor Documentation

◆ HeartMonodomainData() [1/3]

HeartMonodomainData ( )

Constructors.

Definition at line 59 of file HeartMonodomainData.cpp.

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◆ HeartMonodomainData() [2/3]

HeartMonodomainData ( std::shared_ptr< HeartFunctors > heart )

Definition at line 47 of file HeartMonodomainData.cpp.

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◆ HeartMonodomainData() [3/3]

HeartMonodomainData ( const HeartMonodomainData & dataMonodomain )

Definition at line 79 of file HeartMonodomainData.cpp.

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◆ ~HeartMonodomainData()

virtual ~HeartMonodomainData ( )

inlinevirtual

Definition at line 85 of file HeartMonodomainData.hpp.

Member Function Documentation

◆ operator=()

HeartMonodomainData & operator= ( const HeartMonodomainData & dataMonodomain )

Definition at line 104 of file HeartMonodomainData.cpp.

◆ showMe()

void showMe ( std::ostream & output = std::cout )

output: show the data used for the simulation

Definition at line 169 of file HeartMonodomainData.cpp.

◆ setup()

void setup ( const GetPot & dataFile )

external setup: set all the data for the simulation

Definition at line 129 of file HeartMonodomainData.cpp.

◆ reducedConductivityBox()

const region_Type& reducedConductivityBox ( ) const

inline

Definition at line 116 of file HeartMonodomainData.hpp.

◆ reducedConductivityCylinder()

const region_Type& reducedConductivityCylinder ( ) const

inline

Definition at line 121 of file HeartMonodomainData.hpp.

◆ reducedConductivitySphere()

const region_Type& reducedConductivitySphere ( ) const

inline

Definition at line 126 of file HeartMonodomainData.hpp.

◆ verbose()

const UInt& verbose ( ) const

inline

verbose

Definition at line 132 of file HeartMonodomainData.hpp.

◆ uOrder()

std::string uOrder ( ) const

inline

FE space order.

Definition at line 138 of file HeartMonodomainData.hpp.

◆ volumeSurfaceRatio()

const Real& volumeSurfaceRatio ( ) const

inline

Chi.

Definition at line 144 of file HeartMonodomainData.hpp.

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◆ conductivityRatio()

const Real& conductivityRatio ( ) const

inline

lambda, key parameter in the derivation of Monodomain equations

Definition at line 150 of file HeartMonodomainData.hpp.

◆ fibersFile()

std::string fibersFile ( ) const

inline

fiber File

Definition at line 156 of file HeartMonodomainData.hpp.

◆ heartDiffusionFactor()

const Int& heartDiffusionFactor ( ) const

inline

Definition at line 162 of file HeartMonodomainData.hpp.

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◆ hasFibers()

bool hasFibers ( ) const

inline

Definition at line 168 of file HeartMonodomainData.hpp.

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◆ longitudinalConductivity()

const Real& longitudinalConductivity ( ) const

inline

sigma_l

Definition at line 174 of file HeartMonodomainData.hpp.

◆ transversalConductivity()

const Real& transversalConductivity ( ) const

inline

sigma_t

Definition at line 180 of file HeartMonodomainData.hpp.

◆ membraneCapacitance()

const Real& membraneCapacitance ( ) const

inline

Cm.

Definition at line 186 of file HeartMonodomainData.hpp.

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◆ diffusivity()

const Real& diffusivity ( ) const

inline

D.

Definition at line 192 of file HeartMonodomainData.hpp.

◆ postProcessingDirectory()

std::string postProcessingDirectory ( ) const

inline

Post_dir.

Definition at line 198 of file HeartMonodomainData.hpp.

Field Documentation

◆ M_reducedConductivityBox

region_Type M_reducedConductivityBox

private

Definition at line 213 of file HeartMonodomainData.hpp.

◆ M_reducedConductivityCylinder

region_Type M_reducedConductivityCylinder

private

Definition at line 214 of file HeartMonodomainData.hpp.

◆ M_reducedConductivitySphere

region_Type M_reducedConductivitySphere

private

Definition at line 215 of file HeartMonodomainData.hpp.

◆ M_hasFibers

bool M_hasFibers

private

Definition at line 217 of file HeartMonodomainData.hpp.

◆ M_verbose

UInt M_verbose

private

Definition at line 219 of file HeartMonodomainData.hpp.

◆ M_heartDiffusionFactor

Int M_heartDiffusionFactor

private

Definition at line 221 of file HeartMonodomainData.hpp.

◆ M_diffusivity

Real M_diffusivity

private

Definition at line 223 of file HeartMonodomainData.hpp.

◆ M_longitudinalConductivity

Real M_longitudinalConductivity

private

Definition at line 224 of file HeartMonodomainData.hpp.

◆ M_membraneCapacitance

Real M_membraneCapacitance

private

Definition at line 225 of file HeartMonodomainData.hpp.

◆ M_transversalConductivity

Real M_transversalConductivity

private

Definition at line 226 of file HeartMonodomainData.hpp.

◆ M_volumeSurfaceRatio

Real M_volumeSurfaceRatio

private

Definition at line 227 of file HeartMonodomainData.hpp.

◆ M_conductivityRatio

Real M_conductivityRatio

private

Definition at line 228 of file HeartMonodomainData.hpp.

◆ M_fibersDirectory

std::string M_fibersDirectory

private

Definition at line 230 of file HeartMonodomainData.hpp.

◆ M_fibersFile

std::string M_fibersFile

private

Definition at line 231 of file HeartMonodomainData.hpp.

◆ M_postProcessingDirectory

std::string M_postProcessingDirectory

private

Definition at line 232 of file HeartMonodomainData.hpp.

◆ M_uOrder

std::string M_uOrder

private

full name

Definition at line 233 of file HeartMonodomainData.hpp.

The documentation for this class was generated from the following files:

Private Attributes

Public Types

Constructor & Destructor

Operators

Methods

Set Methods

Get Methods

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ region_Type

Constructor & Destructor Documentation

◆ HeartMonodomainData() [1/3]

◆ HeartMonodomainData() [2/3]

◆ HeartMonodomainData() [3/3]

◆ ~HeartMonodomainData()

Member Function Documentation

◆ operator=()

◆ showMe()

◆ setup()

◆ reducedConductivityBox()

◆ reducedConductivityCylinder()

◆ reducedConductivitySphere()

◆ verbose()

◆ uOrder()

◆ volumeSurfaceRatio()

◆ conductivityRatio()

◆ fibersFile()

◆ heartDiffusionFactor()

◆ hasFibers()

◆ longitudinalConductivity()

◆ transversalConductivity()

◆ membraneCapacitance()

◆ diffusivity()

◆ postProcessingDirectory()

Field Documentation

◆ M_reducedConductivityBox

◆ M_reducedConductivityCylinder

◆ M_reducedConductivitySphere

◆ M_hasFibers

◆ M_verbose

◆ M_heartDiffusionFactor

◆ M_diffusivity

◆ M_longitudinalConductivity

◆ M_membraneCapacitance

◆ M_transversalConductivity

◆ M_volumeSurfaceRatio

◆ M_conductivityRatio

◆ M_fibersDirectory

◆ M_fibersFile

◆ M_postProcessingDirectory

◆ M_uOrder