#include <HeartIonicSolver.hpp>

Inheritance diagram for LuoRudy< Mesh, SolverType >:

Collaboration diagram for LuoRudy< Mesh, SolverType >:

Public Types
typedef HeartIonicSolver< Mesh, SolverType >::data_Type	data_Type

typedef HeartIonicSolver< Mesh, SolverType >::vector_Type	vector_Type

typedef HeartIonicSolver< Mesh, SolverType >::function_Type	function_Type

Public Types inherited from HeartIonicSolver< Mesh, SolverType >
typedef HeartIonicData	data_Type

typedef Real(*	function_Type) (const Real &, const Real &, const Real &, const Real &, const ID &)

typedef std::function< Real(const markerID_Type &ref, const Real &x, const Real &y, const Real &z, const ID &i) >	functorTauClose_Type

typedef Mesh	mesh_Type

typedef SolverType::matrix_type	matrix_Type

typedef SolverType::vector_type	vector_Type

typedef SolverType::prec_raw_type	precRaw_Type

typedef SolverType::prec_type	prec_Type

Public Member Functions
	LuoRudy (const data_Type &dataType, const Mesh &mesh, FESpace< Mesh, MapEpetra > &uFEspace, Epetra_Comm &comm)
	Constructor. More...

virtual	~LuoRudy ()

void	updateRepeated ()

void	updateElementSolution (UInt eleID)
	Update the ionic model elvecs. More...

void	computeODECoefficients (const Real &u_ig)

void	solveIonicModel (const vector_Type &u, const Real timeStep)
	Solves the ionic model. More...

void	computeIonicCurrent (Real Capacitance, VectorElemental &elvec, VectorElemental &elvec_u, FESpace< Mesh, MapEpetra > &uFESpace)
	Computes the term -1/ u^n (G (1-u^n/vp) (1-u^n/v_th) + eta_1 v^{n+1}) for the PDE righthand side. More...

void	initialize ()
	Initialize. More...

const vector_Type &	solutionGatingH () const
	Returns the local solution vector for each field. More...

const vector_Type &	solutionGatingJ () const

const vector_Type &	solutionGatingM () const

const vector_Type &	solutionGatingD () const

const vector_Type &	solutionGatingF () const

const vector_Type &	solutionGatingX () const

const vector_Type &	solutionGatingCa () const

Public Member Functions inherited from HeartIonicSolver< Mesh, SolverType >
	HeartIonicSolver (const data_Type &dataType, const Mesh &mesh, FESpace< Mesh, MapEpetra > &uFEspace, Epetra_Comm &comm)
	Constructor. More...

virtual	~HeartIonicSolver ()
	Destructor. More...

FESpace< Mesh, MapEpetra > &	recoveryFESpace ()
	Returns the recovery variable FE space. More...

Epetra_Map const &	getRepeatedMapEpetra () const
	Return maps. More...

MapEpetra const &	getMap () const

Data Fields
Real	M_K0

Real	M_Ki

Real	M_Na0

Real	M_Nai

Real	M_R

Real	M_temperature

Real	M_F

Real	M_permeabilityRatio

Real	M_c

Real	M_Ena

Real	M_Gk

Real	M_Ek

Real	M_Gk1

Real	M_Ek1

Real	M_Ekp

Real	M_Esi

Real	M_ah

Real	M_bh

Real	M_aj

Real	M_bj

Real	M_xii

Real	M_am

Real	M_bm

Real	M_ad

Real	M_bd

Real	M_af

Real	M_bf

Real	M_aX

Real	M_bX

Real	M_ak1

Real	M_bk1

Real	M_Kp

Real	M_K1inf

Real	M_hinf

Real	M_tauh

Real	M_jinf

Real	M_tauj

Real	M_minf

Real	M_taum

Real	M_dinf

Real	M_taud

Real	M_finf

Real	M_tauf

Real	M_Xinf

Real	M_tauX

Real	M_Ina

Real	M_Islow

Real	M_Ik

Real	M_Ik1

Real	M_Ikp

Real	M_Iback

Real	M_Ik1t

vector_Type	M_vectorExponentialh

vector_Type	M_vectorExponentialj

vector_Type	M_vectorExponentialm

vector_Type	M_vectorExponentiald

vector_Type	M_vectorExponentialf

vector_Type	M_vectorExponentialX

vector_Type	M_vectorInfimumh

vector_Type	M_vectorInfimumj

vector_Type	M_vectorInfimumm

vector_Type	M_vectorInfimumd

vector_Type	M_vectorInfimumf

vector_Type	M_vectorInfimumX

vector_Type	M_vectorIonicChange

Data Fields inherited from HeartIonicSolver< Mesh, SolverType >
const data_Type &	M_data

const Mesh &	M_mesh

FESpace< Mesh, MapEpetra > &	M_uFESpace

Epetra_Comm *	M_comm
	MPI communicator. More...

Int	M_me

MapEpetra	M_localMap
	Map. More...

bool	M_verbose
	Boolean that indicates if output is sent to cout. More...

Protected Attributes
vector_Type	M_solutionGatingH
	Global solution h. More...

vector_Type	M_solutionGatingJ
	Global solution j. More...

vector_Type	M_solutionGatingM
	Global solution m. More...

vector_Type	M_solutionGatingD
	Global solution d. More...

vector_Type	M_solutionGatingF
	Global solution f. More...

vector_Type	M_solutionGatingX
	Global solution X. More...

vector_Type	M_solutionGatingCa
	Global solution Ca_i. More...

vector_Type	M_ionicCurrent

vector_Type	M_ionicCurrentRepeated

VectorElemental	M_elemVecIonicCurrent

Additional Inherited Members
Protected Member Functions inherited from HeartIonicSolver< Mesh, SolverType >
UInt	solutionUDimension () const

Detailed Description

template<typename Mesh, typename SolverType = LifeV::SolverAztecOO>
class LifeV::LuoRudy< Mesh, SolverType >

Definition at line 562 of file HeartIonicSolver.hpp.

Member Typedef Documentation

◆ data_Type

typedef HeartIonicSolver<Mesh, SolverType>::data_Type data_Type

Definition at line 565 of file HeartIonicSolver.hpp.

◆ vector_Type

typedef HeartIonicSolver<Mesh, SolverType>::vector_Type vector_Type

Definition at line 566 of file HeartIonicSolver.hpp.

◆ function_Type

typedef HeartIonicSolver<Mesh, SolverType>::function_Type function_Type

Definition at line 567 of file HeartIonicSolver.hpp.

Constructor & Destructor Documentation

◆ LuoRudy()

LuoRudy	(	const data_Type &	dataType,
		const Mesh &	mesh,
		FESpace< Mesh, MapEpetra > &	uFEspace,
		Epetra_Comm &	comm
	)

Constructor.

Definition at line 696 of file HeartIonicSolver.hpp.

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◆ ~LuoRudy()

virtual ~LuoRudy ( )

inlinevirtual

Definition at line 574 of file HeartIonicSolver.hpp.

Member Function Documentation

◆ updateRepeated()

void updateRepeated ( )

virtual

Implements HeartIonicSolver< Mesh, SolverType >.

Definition at line 744 of file HeartIonicSolver.hpp.

◆ updateElementSolution()

void updateElementSolution ( UInt eleIDw )

virtual

Update the ionic model elvecs.

Filling local elvec with recovery variable values in the nodes

Implements HeartIonicSolver< Mesh, SolverType >.

Definition at line 751 of file HeartIonicSolver.hpp.

◆ computeODECoefficients()

void computeODECoefficients ( const Real & u_ig )

Definition at line 915 of file HeartIonicSolver.hpp.

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◆ solveIonicModel()

void solveIonicModel	(	const vector_Type &	u,
		const Real	timeStep
	)

virtual

Solves the ionic model.

Solving dw/dt=eta2 (u/vp - eta3 w)

Implements HeartIonicSolver< Mesh, SolverType >.

Definition at line 766 of file HeartIonicSolver.hpp.

◆ computeIonicCurrent()

void computeIonicCurrent	(	Real	Capacitance,
		VectorElemental &	elvec,
		VectorElemental &	elvec_u,
		FESpace< Mesh, MapEpetra > &	uFESpace
	)

virtual

Computes the term -1/ u^n (G (1-u^n/vp) (1-u^n/v_th) + eta_1 v^{n+1}) for the PDE righthand side.

Implements HeartIonicSolver< Mesh, SolverType >.

Definition at line 975 of file HeartIonicSolver.hpp.

◆ initialize()

void initialize ( )

virtual

Initialize.

Implements HeartIonicSolver< Mesh, SolverType >.

Definition at line 999 of file HeartIonicSolver.hpp.

◆ solutionGatingH()

const vector_Type& solutionGatingH ( ) const

inline

Returns the local solution vector for each field.

Definition at line 592 of file HeartIonicSolver.hpp.

◆ solutionGatingJ()

const vector_Type& solutionGatingJ ( ) const

inline

Definition at line 597 of file HeartIonicSolver.hpp.

◆ solutionGatingM()

const vector_Type& solutionGatingM ( ) const

inline

Definition at line 602 of file HeartIonicSolver.hpp.

◆ solutionGatingD()

const vector_Type& solutionGatingD ( ) const

inline

Definition at line 607 of file HeartIonicSolver.hpp.

◆ solutionGatingF()

const vector_Type& solutionGatingF ( ) const

inline

Definition at line 612 of file HeartIonicSolver.hpp.

◆ solutionGatingX()

const vector_Type& solutionGatingX ( ) const

inline

Definition at line 617 of file HeartIonicSolver.hpp.

◆ solutionGatingCa()

const vector_Type& solutionGatingCa ( ) const

inline

Definition at line 622 of file HeartIonicSolver.hpp.

Field Documentation

◆ M_K0

Real M_K0

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_Ki

Real M_Ki

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_Na0

Real M_Na0

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_Nai

Real M_Nai

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_R

Real M_R

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_temperature

Real M_temperature

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_F

Real M_F

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_permeabilityRatio

Real M_permeabilityRatio

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_c

Real M_c

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_Ena

Real M_Ena

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_Gk

Real M_Gk

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_Ek

Real M_Ek

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_Gk1

Real M_Gk1

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_Ek1

Real M_Ek1

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_Ekp

Real M_Ekp

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_Esi

Real M_Esi

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_ah

Real M_ah

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_bh

Real M_bh

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_aj

Real M_aj

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_bj

Real M_bj

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_xii

Real M_xii

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_am

Real M_am

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_bm

Real M_bm

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_ad

Real M_ad

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_bd

Real M_bd

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_af

Real M_af

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_bf

Real M_bf

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_aX

Real M_aX

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_bX

Real M_bX

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_ak1

Real M_ak1

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_bk1

Real M_bk1

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_Kp

Real M_Kp

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_K1inf

Real M_K1inf

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_hinf

Real M_hinf

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_tauh

Real M_tauh

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_jinf

Real M_jinf

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_tauj

Real M_tauj

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_minf

Real M_minf

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_taum

Real M_taum

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_dinf

Real M_dinf

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_taud

Real M_taud

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_finf

Real M_finf

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_tauf

Real M_tauf

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_Xinf

Real M_Xinf

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_tauX

Real M_tauX

Definition at line 627 of file HeartIonicSolver.hpp.

◆ M_Ina

Real M_Ina

Definition at line 634 of file HeartIonicSolver.hpp.

◆ M_Islow

Real M_Islow

Definition at line 636 of file HeartIonicSolver.hpp.

◆ M_Ik

Real M_Ik

Definition at line 638 of file HeartIonicSolver.hpp.

◆ M_Ik1

Real M_Ik1

Definition at line 640 of file HeartIonicSolver.hpp.

◆ M_Ikp

Real M_Ikp

Definition at line 642 of file HeartIonicSolver.hpp.

◆ M_Iback

Real M_Iback

Definition at line 644 of file HeartIonicSolver.hpp.

◆ M_Ik1t

Real M_Ik1t

Definition at line 646 of file HeartIonicSolver.hpp.

◆ M_vectorExponentialh

vector_Type M_vectorExponentialh

Definition at line 648 of file HeartIonicSolver.hpp.

◆ M_vectorExponentialj

vector_Type M_vectorExponentialj

Definition at line 649 of file HeartIonicSolver.hpp.

◆ M_vectorExponentialm

vector_Type M_vectorExponentialm

Definition at line 650 of file HeartIonicSolver.hpp.

◆ M_vectorExponentiald

vector_Type M_vectorExponentiald

Definition at line 651 of file HeartIonicSolver.hpp.

◆ M_vectorExponentialf

vector_Type M_vectorExponentialf

Definition at line 652 of file HeartIonicSolver.hpp.

◆ M_vectorExponentialX

vector_Type M_vectorExponentialX

Definition at line 653 of file HeartIonicSolver.hpp.

◆ M_vectorInfimumh

vector_Type M_vectorInfimumh

Definition at line 654 of file HeartIonicSolver.hpp.

◆ M_vectorInfimumj

vector_Type M_vectorInfimumj

Definition at line 655 of file HeartIonicSolver.hpp.

◆ M_vectorInfimumm

vector_Type M_vectorInfimumm

Definition at line 656 of file HeartIonicSolver.hpp.

◆ M_vectorInfimumd

vector_Type M_vectorInfimumd

Definition at line 657 of file HeartIonicSolver.hpp.

◆ M_vectorInfimumf

vector_Type M_vectorInfimumf

Definition at line 658 of file HeartIonicSolver.hpp.

◆ M_vectorInfimumX

vector_Type M_vectorInfimumX

Definition at line 659 of file HeartIonicSolver.hpp.

◆ M_vectorIonicChange

vector_Type M_vectorIonicChange

Definition at line 660 of file HeartIonicSolver.hpp.

◆ M_solutionGatingH

vector_Type M_solutionGatingH

protected

Global solution h.

Definition at line 664 of file HeartIonicSolver.hpp.

◆ M_solutionGatingJ

vector_Type M_solutionGatingJ

protected

Global solution j.

Definition at line 666 of file HeartIonicSolver.hpp.

◆ M_solutionGatingM

vector_Type M_solutionGatingM

protected

Global solution m.

Definition at line 668 of file HeartIonicSolver.hpp.

◆ M_solutionGatingD

vector_Type M_solutionGatingD

protected

Global solution d.

Definition at line 670 of file HeartIonicSolver.hpp.

◆ M_solutionGatingF

vector_Type M_solutionGatingF

protected

Global solution f.

Definition at line 672 of file HeartIonicSolver.hpp.

◆ M_solutionGatingX

vector_Type M_solutionGatingX

protected

Global solution X.

Definition at line 674 of file HeartIonicSolver.hpp.

◆ M_solutionGatingCa

vector_Type M_solutionGatingCa

protected

Global solution Ca_i.

Definition at line 676 of file HeartIonicSolver.hpp.

◆ M_ionicCurrent

vector_Type M_ionicCurrent

protected

Definition at line 678 of file HeartIonicSolver.hpp.

◆ M_ionicCurrentRepeated

vector_Type M_ionicCurrentRepeated

protected

Definition at line 680 of file HeartIonicSolver.hpp.

◆ M_elemVecIonicCurrent

VectorElemental M_elemVecIonicCurrent

protected

Definition at line 682 of file HeartIonicSolver.hpp.

The documentation for this class was generated from the following file:

HeartIonicSolver.hpp

Public Types

Public Member Functions

Data Fields

Protected Attributes

Additional Inherited Members

Detailed Description

template<typename Mesh, typename SolverType = LifeV::SolverAztecOO> class LifeV::LuoRudy< Mesh, SolverType >

Member Typedef Documentation

◆ data_Type

◆ vector_Type

◆ function_Type

Constructor & Destructor Documentation

◆ LuoRudy()

◆ ~LuoRudy()

Member Function Documentation

◆ updateRepeated()

◆ updateElementSolution()

◆ computeODECoefficients()

◆ solveIonicModel()

◆ computeIonicCurrent()

◆ initialize()

◆ solutionGatingH()

◆ solutionGatingJ()

◆ solutionGatingM()

◆ solutionGatingD()

◆ solutionGatingF()

◆ solutionGatingX()

◆ solutionGatingCa()

Field Documentation

◆ M_K0

◆ M_Ki

◆ M_Na0

◆ M_Nai

◆ M_R

◆ M_temperature

◆ M_F

◆ M_permeabilityRatio

◆ M_c

◆ M_Ena

◆ M_Gk

◆ M_Ek

◆ M_Gk1

◆ M_Ek1

◆ M_Ekp

◆ M_Esi

◆ M_ah

◆ M_bh

◆ M_aj

◆ M_bj

◆ M_xii

◆ M_am

◆ M_bm

◆ M_ad

◆ M_bd

◆ M_af

◆ M_bf

◆ M_aX

◆ M_bX

◆ M_ak1

◆ M_bk1

◆ M_Kp

◆ M_K1inf

◆ M_hinf

◆ M_tauh

◆ M_jinf

◆ M_tauj

◆ M_minf

◆ M_taum

◆ M_dinf

◆ M_taud

◆ M_finf

◆ M_tauf

◆ M_Xinf

◆ M_tauX

◆ M_Ina

◆ M_Islow

◆ M_Ik

◆ M_Ik1

◆ M_Ikp

◆ M_Iback

template<typename Mesh, typename SolverType = LifeV::SolverAztecOO>
class LifeV::LuoRudy< Mesh, SolverType >