#include <HeartBidomainData.hpp>

Inheritance diagram for HeartBidomainData:

Collaboration diagram for HeartBidomainData:

Private Attributes
region_Type	M_reducedConductivityBox

region_Type	M_reducedConductivityCylinder

region_Type	M_reducedConductivitySphere

bool	M_fibersFormat

bool	M_hasFibers

UInt	M_BDForder

bool	M_verbose

Int	M_heartDiffusionFactor

Real	M_externalDiffusivity

Real	M_internalDiffusivity

Real	M_longitudinalExternalConductivity

Real	M_longitudinalInternalConductivity

Real	M_membraneCapacitance

Real	M_transversalExternalConductivity

Real	M_transversalInternalConductivity

Real	M_volumeSurfaceRatio

std::string	M_fibersDirectory

std::string	M_fibersFile

std::string	M_postProcessingDirectory

std::string	M_uOrder
	full name More...

Public Types
typedef std::function< Real(Real const &x, Real const &y, Real const &z, Real const &t, ID const &id, Real const &) >	region_Type

Constructor & Destructor
	HeartBidomainData ()
	Constructors. More...

	HeartBidomainData (std::shared_ptr< HeartFunctors > heart)

	HeartBidomainData (const HeartBidomainData &dataBidomain)

virtual	~HeartBidomainData ()

Operators
HeartBidomainData &	operator= (const HeartBidomainData &dataBidomain)

Methods
void	showMe (std::ostream &output=std::cout)
	Output: show the data used for the simulation. More...

Set Methods
void	setup (const GetPot &dataFile)
	external setup: set all the data for the simulation More...

Get Methods
const region_Type &	reducedConductivityBox () const

const region_Type &	reducedConductivityCylinder () const

const region_Type &	reducedConductivitySphere () const

const bool &	verbose () const
	verbose More...

std::string	uOrder () const
	FE space order. More...

const Real &	volumeSurfaceRatio () const
	Chi. More...

std::string	fibersFile () const
	fiber File More...

const Int &	heartDiffusionFactor () const

const bool &	hasFibers () const

const bool &	fibersFormat () const
	format vct More...

const Real &	longitudinalInternalConductivity () const
	sigma_l More...

const Real &	longitudinalExternalConductivity () const

const Real &	transversalInternalConductivity () const
	sigma_t More...

const Real &	transversalExternalConductivity () const

const Real &	membraneCapacitance () const
	Cm. More...

const Real &	internalDiffusivity () const
	D. More...

const Real &	externalDiffusivity () const
	Post_dir. More...

std::string	postProcessingDirectory () const
	Post_dir. More...

UInt	BDForder () const

Additional Inherited Members
Public Member Functions inherited from MeshData
	MeshData ()
	Empty Constructor. More...

	MeshData (const GetPot &dataFile, const std::string &section="space_discretization")
	Constructor. More...

	MeshData (const MeshData &meshData)
	Copy constructor. More...

virtual	~MeshData ()
	Virtual destructor. More...

void	setup (const GetPot &dataFile, const std::string &section)
	Read the dataFile and set all the members. More...

void	setup (const Teuchos::ParameterList &meshParameters)
	Set all members using a Teuchos ParameterList. More...

virtual void	showMe (std::ostream &output=std::cout) const
	Display the values. More...

void	setMeshDir (const std::string &dir)

void	setMeshFile (const std::string &file)

void	setMeshType (const std::string &type)

void	setMOrder (const std::string &order)

void	setVerbose (const bool &isVerbose)

const std::string &	meshDir () const

const std::string &	meshFile () const

const std::string &	meshType () const

const std::string &	mOrder () const

const bool &	verbose () const

Public Member Functions inherited from TimeData
	TimeData ()
	Empty Constructor. More...

	TimeData (const GetPot &dataFile, const std::string &section="time_discretization")
	Constructor. More...

	TimeData (const TimeData &TimeData)
	Copy constructor. More...

virtual	~TimeData ()
	Virtual destructor. More...

void	setup (const GetPot &dfile, const std::string &section="time_discretization")
	Read the dataFile and set all the internal quantities. More...

void	updateTime ()
	Update the time by a timestep. More...

bool	canAdvance ()
	Return if we can make a new timestep. More...

bool	isFirstTimeStep ()
	Return if it is the initial time step. More...

bool	isLastTimeStep ()
	Return if it is the last time step. More...

void	showMe (std::ostream &output=std::cout) const
	Display general information about the content of the class. More...

Real	round (const Real &n, const Int &decimal=10) const

void	setInitialTime (const Real &initialTime)
	Set the initial time step. More...

void	setEndTime (const Real &endTime)
	Set the final time step. More...

void	setTime (const Real &time)
	Set the present time of the simulation. More...

void	setTimeStep (const Real &timeStep)
	Set the initial time step. More...

void	setTimeStepNumber (const UInt &timeStepNumber)
	Set the time step number. More...

const Real &	initialTime () const
	Get the initial time step. More...

const Real &	endTime () const
	Get the final time step. More...

const Real &	periodTime () const
	Get the period. More...

const Real &	time () const
	Get the present time. More...

Real	leftTime () const
	Get the time left. More...

Real	elapsedTime () const
	Get the elapsed time. More...

Real	inCycleTime () const
	Get the present time shifted inside the first cycle (i.e. More...

Real	previousTime () const
	Get the previous time. More...

Real	nextTime () const
	Get the next time. More...

const Real &	timeStep () const
	Get the time step used for advancing. More...

const UInt &	timeStepNumber () const
	Get the number of time step performed. More...

Detailed Description

Definition at line 55 of file HeartBidomainData.hpp.

Member Typedef Documentation

◆ region_Type

typedef std::function< Real ( Real const& x, Real const& y, Real const& z, Real const& t, ID const& id, Real const&) > region_Type

Definition at line 74 of file HeartBidomainData.hpp.

Constructor & Destructor Documentation

◆ HeartBidomainData() [1/3]

HeartBidomainData ( )

Constructors.

Definition at line 60 of file HeartBidomainData.cpp.

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◆ HeartBidomainData() [2/3]

HeartBidomainData ( std::shared_ptr< HeartFunctors > heart )

Definition at line 48 of file HeartBidomainData.cpp.

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◆ HeartBidomainData() [3/3]

HeartBidomainData ( const HeartBidomainData & dataBidomain )

Definition at line 86 of file HeartBidomainData.cpp.

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◆ ~HeartBidomainData()

virtual ~HeartBidomainData ( )

inlinevirtual

Definition at line 90 of file HeartBidomainData.hpp.

Member Function Documentation

◆ operator=()

HeartBidomainData & operator= ( const HeartBidomainData & dataBidomain )

Definition at line 117 of file HeartBidomainData.cpp.

◆ showMe()

void showMe ( std::ostream & output = std::cout )

Output: show the data used for the simulation.

Definition at line 203 of file HeartBidomainData.cpp.

◆ setup()

void setup ( const GetPot & dataFile )

external setup: set all the data for the simulation

Definition at line 148 of file HeartBidomainData.cpp.

◆ reducedConductivityBox()

const region_Type& reducedConductivityBox ( ) const

inline

Definition at line 123 of file HeartBidomainData.hpp.

◆ reducedConductivityCylinder()

const region_Type& reducedConductivityCylinder ( ) const

inline

Definition at line 128 of file HeartBidomainData.hpp.

◆ reducedConductivitySphere()

const region_Type& reducedConductivitySphere ( ) const

inline

Definition at line 133 of file HeartBidomainData.hpp.

◆ verbose()

const bool& verbose ( ) const

inline

verbose

Definition at line 139 of file HeartBidomainData.hpp.

◆ uOrder()

std::string uOrder ( ) const

inline

FE space order.

Definition at line 145 of file HeartBidomainData.hpp.

◆ volumeSurfaceRatio()

const Real& volumeSurfaceRatio ( ) const

inline

Chi.

Definition at line 151 of file HeartBidomainData.hpp.

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◆ fibersFile()

std::string fibersFile ( ) const

inline

fiber File

Definition at line 156 of file HeartBidomainData.hpp.

◆ heartDiffusionFactor()

const Int& heartDiffusionFactor ( ) const

inline

Definition at line 161 of file HeartBidomainData.hpp.

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◆ hasFibers()

const bool& hasFibers ( ) const

inline

Definition at line 166 of file HeartBidomainData.hpp.

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◆ fibersFormat()

const bool& fibersFormat ( ) const

inline

format vct

Definition at line 172 of file HeartBidomainData.hpp.

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◆ longitudinalInternalConductivity()

const Real& longitudinalInternalConductivity ( ) const

inline

sigma_l

Definition at line 178 of file HeartBidomainData.hpp.

◆ longitudinalExternalConductivity()

const Real& longitudinalExternalConductivity ( ) const

inline

Definition at line 182 of file HeartBidomainData.hpp.

◆ transversalInternalConductivity()

const Real& transversalInternalConductivity ( ) const

inline

sigma_t

Definition at line 188 of file HeartBidomainData.hpp.

◆ transversalExternalConductivity()

const Real& transversalExternalConductivity ( ) const

inline

Definition at line 192 of file HeartBidomainData.hpp.

◆ membraneCapacitance()

const Real& membraneCapacitance ( ) const

inline

Cm.

Definition at line 198 of file HeartBidomainData.hpp.

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◆ internalDiffusivity()

const Real& internalDiffusivity ( ) const

inline

D.

Definition at line 203 of file HeartBidomainData.hpp.

◆ externalDiffusivity()

const Real& externalDiffusivity ( ) const

inline

Post_dir.

Definition at line 208 of file HeartBidomainData.hpp.

◆ postProcessingDirectory()

std::string postProcessingDirectory ( ) const

inline

Post_dir.

Definition at line 213 of file HeartBidomainData.hpp.

◆ BDForder()

UInt BDForder ( ) const

inline

Definition at line 218 of file HeartBidomainData.hpp.

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Field Documentation

◆ M_reducedConductivityBox

region_Type M_reducedConductivityBox

private

Definition at line 227 of file HeartBidomainData.hpp.

◆ M_reducedConductivityCylinder

region_Type M_reducedConductivityCylinder

private

Definition at line 228 of file HeartBidomainData.hpp.

◆ M_reducedConductivitySphere

region_Type M_reducedConductivitySphere

private

Definition at line 229 of file HeartBidomainData.hpp.

◆ M_fibersFormat

bool M_fibersFormat

private

Definition at line 231 of file HeartBidomainData.hpp.

◆ M_hasFibers

bool M_hasFibers

private

Definition at line 232 of file HeartBidomainData.hpp.

◆ M_BDForder

UInt M_BDForder

private

Definition at line 235 of file HeartBidomainData.hpp.

◆ M_verbose

bool M_verbose

private

Definition at line 236 of file HeartBidomainData.hpp.

◆ M_heartDiffusionFactor

Int M_heartDiffusionFactor

private

Definition at line 238 of file HeartBidomainData.hpp.

◆ M_externalDiffusivity

Real M_externalDiffusivity

private

Definition at line 240 of file HeartBidomainData.hpp.

◆ M_internalDiffusivity

Real M_internalDiffusivity

private

Definition at line 241 of file HeartBidomainData.hpp.

◆ M_longitudinalExternalConductivity

Real M_longitudinalExternalConductivity

private

Definition at line 242 of file HeartBidomainData.hpp.

◆ M_longitudinalInternalConductivity

Real M_longitudinalInternalConductivity

private

Definition at line 243 of file HeartBidomainData.hpp.

◆ M_membraneCapacitance

Real M_membraneCapacitance

private

Definition at line 244 of file HeartBidomainData.hpp.

◆ M_transversalExternalConductivity

Real M_transversalExternalConductivity

private

Definition at line 245 of file HeartBidomainData.hpp.

◆ M_transversalInternalConductivity

Real M_transversalInternalConductivity

private

Definition at line 246 of file HeartBidomainData.hpp.

◆ M_volumeSurfaceRatio

Real M_volumeSurfaceRatio

private

Definition at line 247 of file HeartBidomainData.hpp.

◆ M_fibersDirectory

std::string M_fibersDirectory

private

Definition at line 249 of file HeartBidomainData.hpp.

◆ M_fibersFile

std::string M_fibersFile

private

Definition at line 250 of file HeartBidomainData.hpp.

◆ M_postProcessingDirectory

std::string M_postProcessingDirectory

private

Definition at line 251 of file HeartBidomainData.hpp.

◆ M_uOrder

std::string M_uOrder

private

full name

Definition at line 252 of file HeartBidomainData.hpp.

The documentation for this class was generated from the following files:

Private Attributes

Public Types

Constructor & Destructor

Operators

Methods

Set Methods

Get Methods

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ region_Type

Constructor & Destructor Documentation

◆ HeartBidomainData() [1/3]

◆ HeartBidomainData() [2/3]

◆ HeartBidomainData() [3/3]

◆ ~HeartBidomainData()

Member Function Documentation

◆ operator=()

◆ showMe()

◆ setup()

◆ reducedConductivityBox()

◆ reducedConductivityCylinder()

◆ reducedConductivitySphere()

◆ verbose()

◆ uOrder()

◆ volumeSurfaceRatio()

◆ fibersFile()

◆ heartDiffusionFactor()

◆ hasFibers()

◆ fibersFormat()

◆ longitudinalInternalConductivity()

◆ longitudinalExternalConductivity()

◆ transversalInternalConductivity()

◆ transversalExternalConductivity()

◆ membraneCapacitance()

◆ internalDiffusivity()

◆ externalDiffusivity()

◆ postProcessingDirectory()

◆ BDForder()

Field Documentation

◆ M_reducedConductivityBox

◆ M_reducedConductivityCylinder

◆ M_reducedConductivitySphere

◆ M_fibersFormat

◆ M_hasFibers

◆ M_BDForder

◆ M_verbose

◆ M_heartDiffusionFactor

◆ M_externalDiffusivity

◆ M_internalDiffusivity

◆ M_longitudinalExternalConductivity

◆ M_longitudinalInternalConductivity

◆ M_membraneCapacitance

◆ M_transversalExternalConductivity

◆ M_transversalInternalConductivity

◆ M_volumeSurfaceRatio

◆ M_fibersDirectory

◆ M_fibersFile

◆ M_postProcessingDirectory

◆ M_uOrder