- a -

• A() : IonicAlievPanfilov
• abs() : VectorContainer< VectorType, ContainerType > , VectorEpetra
• absoluteTolerance() : FSIData , StructuralConstitutiveLawData
• absorb() : GetPot
• AbstractNumericalFlux() : AbstractNumericalFlux< Mesh, SolverType >
• activatedDeterminant() : AnisotropicMultimechanismMaterialNonLinear< MeshType > , DistributedHolzapfelMaterialNonLinear< MeshType > , HolzapfelGeneralizedMaterialNonLinear< MeshType > , HolzapfelMaterialNonLinear< MeshType > , StructuralAnisotropicConstitutiveLaw< MeshType >
• activatedUnitFiber() : AnisotropicMultimechanismMaterialNonLinear< MeshType > , DistributedHolzapfelMaterialNonLinear< MeshType > , HolzapfelGeneralizedMaterialNonLinear< MeshType > , HolzapfelMaterialNonLinear< MeshType > , StructuralAnisotropicConstitutiveLaw< MeshType >
• activationData() : StimulusPMJ
• activationDisplacement() : AnisotropicMultimechanismMaterialNonLinear< MeshType > , DistributedHolzapfelMaterialNonLinear< MeshType > , HolzapfelGeneralizedMaterialNonLinear< MeshType > , HolzapfelMaterialNonLinear< MeshType > , StructuralAnisotropicConstitutiveLaw< MeshType >
• ad() : IonicLuoRudyI
• Ad() : IonicTenTusscher06
• adaptedBdQR() : LevelSetBDQRAdapter< FESpaceType, VectorType >
• adaptedQR() : QRAdapterNeverAdapt , MCQuadrature< MeshType >
• add() : LifeChronoManager< TimerType > , MatrixEpetra< DataType > , StringDataList , VectorEpetra
• add_facets() : convert_spec< dim > , convert_spec< 1 > , convert_spec< 2 >
• Add_KN_() : Add_KN_< R >
• Add_Mulc_KN_() : Add_Mulc_KN_< R >
• add_ridges() : convert_spec< dim > , convert_spec< 1 > , convert_spec< 2 >
• addAdvection() : ADRAssembler< mesh_type, matrix_type, vector_type >
• addAppliedCurrent() : ElectroIonicModel
• addBC() : BCHandler , BCInterface3D< BcHandler, PhysicalSolverType >
• addBCIdentifier() : BCBase
• addBcToHandler() : BCInterface0D< BcHandler, PhysicalSolverType > , BCInterface1D< BcHandler, PhysicalSolverType > , BCInterface3D< BcHandler, PhysicalSolverType >
• addComponentsVector() : BCInterfaceData3D
• addConvection() : OseenAssembler< meshType, matrixType, vectorType >
• addConvectionRhs() : OseenAssembler< meshType, matrixType, vectorType >
• addCoupling() : MultiscaleModel
• addDiffusion() : ADRAssembler< mesh_type, matrix_type, vector_type >
• addDivergence() : OseenAssembler< meshType, matrixType, vectorType >
• addDOFInterface() : ExporterHDF5Mesh3D< MeshType >
• addDyadicProduct() : MatrixEpetra< DataType >
• addEdge() : RegionMesh< GeoShapeType, MCType >
• addElement() : RegionMesh< GeoShapeType, MCType >
• addFace() : RegionMesh< GeoShapeType, MCType >
• addFacet() : RegionMesh< GeoShapeType, MCType >
• addFluxTerms() : OseenAssembler< meshType, matrixType, vectorType >
• addGradientTranspose() : OseenAssembler< meshType, matrixType, vectorType >
• addGradPressure() : OseenAssembler< meshType, matrixType, vectorType >
• addGroup() : MultiscaleCommunicatorsManager
• addIfNotThere() : MeshElementBareHandler< BareItemType >
• addIPStabilization() : ADRAssemblerIP< mesh_type, matrix_type, vector_type >
• addIPStabilizationStencil() : ADRAssemblerIP< mesh_type, matrix_type, vector_type >
• addMap() : MapVector< MapType >
• addMass() : ADRAssembler< mesh_type, matrix_type, vector_type > , OseenAssembler< meshType, matrixType, vectorType >
• addMassDivW() : OseenAssembler< meshType, matrixType, vectorType >
• addMassRhs() : ADRAssembler< mesh_type, matrix_type, vector_type > , OseenAssembler< meshType, matrixType, vectorType >
• addMeshPartitionAll() : ExporterHDF5Mesh3D< MeshType >
• addMyMeshPartition() : ExporterHDF5Mesh3D< MeshType >
• addNewtonConvection() : OseenAssembler< meshType, matrixType, vectorType >
• addPartitionGraph() : ExporterHDF5Mesh3D< MeshType >
• addPoint() : QuadratureRule , RegionMesh< GeoShapeType, MCType >
• addPressureMass() : OseenAssembler< meshType, matrixType, vectorType >
• addRidge() : RegionMesh< GeoShapeType, MCType >
• addScalarField() : FEFunction< MeshType, MapType, ReturnType >
• addStiffStrain() : ADRAssembler< mesh_type, matrix_type, vector_type > , OseenAssembler< meshType, matrixType, vectorType >
• addSymmetricConvection() : OseenAssembler< meshType, matrixType, vectorType >
• addSystemMatrixTo() : ALESolver , HarmonicExtensionSolver< Mesh, SolverType >
• addTo() : EvaluateNodalExpressionVectorElement< MeshType, SolutionSpaceType, ExpressionType, QRAdapterType > , EvaluateNodalExpressionVectorElementFaceID< MeshType, SolutionTestSpace, ExpressionType > , GraphElement< MeshType, TestSpaceType, SolutionSpaceType, ExpressionType > , IntegrateMatrixElement< MeshType, TestSpaceType, SolutionSpaceType, ExpressionType, QRAdapterType > , IntegrateMatrixElementLSAdapted< MeshType, TestSpaceType, SolutionSpaceType, ExpressionType, LSFESpaceType, LSVectorType > , IntegrateMatrixFaceID< MeshType, TestSpaceType, SolutionSpaceType, ExpressionType > , IntegrateMatrixFaceIDLSAdapted< MeshType, TestSpaceType, SolutionSpaceType, ExpressionType, LSFESpaceType, LSVectorType > , IntegrateMatrixVolumeID< MeshType, TestSpaceType, SolutionSpaceType, ExpressionType, QRAdapterType > , IntegrateValueElement< MeshType, ExpressionType, QRAdapterType > , IntegrateValueElementLSAdapted< MeshType, ExpressionType, LSFESpaceType, VectorType > , IntegrateVectorElement< MeshType, TestSpaceType, ExpressionType, QRAdapterType > , IntegrateVectorElementLSAdapted< MeshType, TestSpaceType, ExpressionType, LSFESpaceType, LSVectorType > , IntegrateVectorFaceID< MeshType, TestSpaceType, ExpressionType > , IntegrateVectorFaceIDLSAdapted< MeshType, TestSpaceType, ExpressionType, LSFESpaceType, LSVectorType > , IntegrateVectorVolumeID< MeshType, TestSpaceType, ExpressionType, QRAdapterType >
• addToBlock() : MonolithicBlock
• addToClosed() : IntegrateMatrixElement< MeshType, TestSpaceType, SolutionSpaceType, ExpressionType, QRAdapterType >
• addToCoefficient() : MatrixEpetra< DataType >
• addToCoefficients() : MatrixBlockMonolithicEpetraView< DataType > , MatrixEpetra< DataType > , MatrixEpetraStructuredView< DataType >
• addToCoupling() : MonolithicBlock , MonolithicBlockComposed , MonolithicBlockMatrix
• addToGlobalMatrix() : MonolithicBlockMatrix
• addToSubdomain() : IntegrateMatrixElement< MeshType, TestSpaceType, SolutionSpaceType, ExpressionType, QRAdapterType >
• addValue() : AssertContext
• addVariable() : Exporter< MeshType >
• addVectorField() : FEFunction< MeshType, MapType, ReturnType >
• addViscousStress() : OseenAssembler< meshType, matrixType, vectorType >
• addVolume() : RegionMesh< GeoShapeType, MCType >
• ADRAssembler() : ADRAssembler< mesh_type, matrix_type, vector_type >
• ADRAssemblerIP() : ADRAssemblerIP< mesh_type, matrix_type, vector_type >
• advectionAssemblyChrono() : ADRAssembler< mesh_type, matrix_type, vector_type >
• af() : IonicLuoRudyI
• Af() : IonicTenTusscher06
• Af2() : IonicTenTusscher06
• ah() : IonicLuoRudyI
• AH() : IonicTenTusscher06
• aj() : IonicLuoRudyI
• AJ() : IonicTenTusscher06
• aK1() : IonicLuoRudyI
• Ak1() : IonicTenTusscher06
• ALESolver() : ALESolver
• ALETimeAdvance() : FSIOperator
• ALETimeAdvanceMethod() : FSIOperator
• algorithm() : FSIData
• allMeshParts() : MeshPartitionTool< MeshType >
• allocatePerElements() : MeshVolumeSubdivision< MeshType >
• allocateSolver() : BelosOperator , BelosOperatorAlgebra
• allocateSpace() : FastAssembler , FastAssemblerMixed , FastAssemblerNS
• allocateSpace_SUPG() : FastAssembler
• allocateTmpVects() : CompositeOperator
• allTranspose() : ComposedOperator< OperatorType >
• alpha() : OneDFSIData , StructuralConstitutiveLawData , TimeAndExtrapolationHandler , TimeAndExtrapolationHandlerQuadPts< DIM > , ZeroDimensionalElementPassiveDiode
• Alphaf() : FSIOperator
• am() : IonicLuoRudyI
• AM() : IonicTenTusscher06
• amplitude_cos() : Cos_min_Sin
• amplitude_sin() : Cos_min_Sin
• analysisType() : WallTensionEstimatorData
• Analytical_Solution() : Analytical_Solution
• analyzeTensions() : WallTensionEstimator< Mesh > , WallTensionEstimatorCylindricalCoordinates< Mesh >
• analyzeTensionsRecoveryCauchyStresses() : WallTensionEstimator< Mesh >
• analyzeTensionsRecoveryCauchyStressesCylindrical() : WallTensionEstimatorCylindricalCoordinates< Mesh >
• analyzeTensionsRecoveryDisplacement() : WallTensionEstimator< Mesh >
• analyzeTensionsRecoveryDisplacementCylindrical() : WallTensionEstimatorCylindricalCoordinates< Mesh >
• analyzeTensionsRecoveryEigenvalues() : WallTensionEstimator< Mesh >
• analyzeTensionsRecoveryEigenvaluesCylindrical() : WallTensionEstimatorCylindricalCoordinates< Mesh >
• analyzeTensionsRecoveryVonMisesStress() : WallTensionEstimator< Mesh >
• aneurismFluxInVectorial() : ResistanceTest::Private
• anisotropicLaw() : StructuralConstitutiveLaw< MeshType >
• AnisotropicMultimechanismMaterialNonLinear() : AnisotropicMultimechanismMaterialNonLinear< MeshType >
• appliedCurrent() : ElectroIonicModel , ElectroStimulus , HeartFunctors , StimulusPacingProtocol , StimulusPMJ , StimulusSingleSource
• appliedCurrentIntraPtr() : ElectroETABidomainSolver< Mesh, IonicModel >
• appliedCurrentPtr() : ElectroETAMonodomainSolver< Mesh, IonicModel > , ElectroIonicModel
• apply() : AnisotropicMultimechanismMaterialNonLinear< MeshType >
• Apply() : ComposedOperator< OperatorType >
• apply() : StabilizationIP< MeshType, DofType > , DistributedHolzapfelMaterialNonLinear< MeshType > , ExponentialMaterialNonLinear< MeshType >
• Apply() : FSIExactJacobian::Epetra_ExactJacobian
• apply() : HolzapfelGeneralizedMaterialNonLinear< MeshType > , HolzapfelMaterialNonLinear< MeshType > , NeoHookeanMaterialNonLinear< MeshType > , OpenMPParameters
• Apply() : ApproximatedInvertibleRowMatrix , aSIMPLEOperator , BlockJacobiPreconditioner , BlockOperator , CompositeOperator , ConfinedOperator , FSIApplyOperator , FSIApplyOperatorNonConforming , IdentityOperator , InvertibleOperator , LinearOperator
• apply() : LinearOperator , LinearOperatorAlgebra
• Apply() : LinearOperatorAlgebra , LumpedOperator , NavierStokesOperator , NavierStokesPreconditionerOperator , NullOperator , RowMatrixPreconditioner , SolverOperator , SolverOperatorAlgo , TwoLevelOperator , Preconditioner , PreconditionerComposed , PreconditionerComposition , PreconditionerIfpack , PreconditionerLinearSolver , PreconditionerML
• apply() : SecondOrderExponentialMaterialNonLinear< MeshType > , StructuralAnisotropicConstitutiveLaw< MeshType > , StructuralConstitutiveLaw< MeshType > , StructuralIsotropicConstitutiveLaw< MeshType > , StructuralOperator< Mesh > , VectorEpetra , VenantKirchhoffMaterialLinear< MeshType > , VenantKirchhoffMaterialNonLinear< MeshType > , VenantKirchhoffMaterialNonLinearPenalized< MeshType >
• Apply_DirectOperator() : ComposedOperator< OperatorType >
• Apply_InverseOperator() : ComposedOperator< OperatorType >
• apply_matrix() : Stabilization , StabilizationSUPG , StabilizationSUPG_semi_implicit , StabilizationSUPG_semi_implicit_ale , StabilizationSUPGALE
• apply_vector() : Stabilization , StabilizationSUPG , StabilizationSUPG_semi_implicit , StabilizationSUPG_semi_implicit_ale , StabilizationSUPGALE
• applyBC() : OneDFSIBC , OneDFSIBCHandler
• applyBCresidual() : FSIHandler
• applyBCsolution() : FSIHandler
• applyBCstructure() : FSIHandler
• applyBoundaryConditions() : ALESolver , DarcySolverLinear< MeshType > , FSIMonolithicGE , FSIMonolithicGI , FSIOperator , HarmonicExtensionSolver< Mesh, SolverType > , HeartBidomainSolver< Mesh, SolverType > , HeartMonodomainSolver< Mesh, SolverType > , MonolithicBlock , MonolithicBlockComposedNN , MonolithicBlockMatrix , NavierStokesSolverBlocks , OseenSolver< MeshType, SolverType > , StructuralOperator< Mesh > , VenantKirchhoffViscoelasticSolver< Mesh, SolverType >
• applyBoundaryConditionsJacobian() : NavierStokesSolverBlocks
• applyBoundaryConditionsResidual() : NavierStokesSolverBlocks
• applyBoundaryConditionsSolution() : NavierStokesSolverBlocks
• applyDirichletBCToMatrix() : OneDFSISolver
• ApplyInverse() : ComposedOperator< OperatorType > , FSIExactJacobian::Epetra_ExactJacobian , ApproximatedInvertibleRowMatrix , aSIMPLEOperator , BlockJacobiPreconditioner , BlockOperator , CompositeOperator , ConfinedOperator , FSIApplyOperator , FSIApplyOperatorNonConforming , IdentityOperator , InvertibleOperator
• applyInverse() : LinearOperator
• ApplyInverse() : LinearOperator
• applyInverse() : LinearOperatorAlgebra
• ApplyInverse() : LinearOperatorAlgebra , LumpedOperator , NavierStokesOperator , NavierStokesPreconditionerOperator , NullOperator , RowMatrixPreconditioner , SolverOperator , SolverOperatorAlgo , TwoLevelOperator , Preconditioner , PreconditionerComposed , PreconditionerComposition , PreconditionerIfpack , PreconditionerLinearSolver , PreconditionerML
• applyInverseFluidMassOnGamma() : FSIHandler
• applyInverseInterfaceFluidMass() : FSIApplyOperatorNonConforming
• applyNoTranspose() : BlockOperator , FSIApplyOperator , NavierStokesOperator
• applyPreconditioner() : MonolithicBlockMatrix
• applyRHS() : StabilizationSD< MeshType, DofType >
• applyRobinCoupling() : MonolithicRobinInterface
• applySD() : StabilizationSD< MeshType, DofType >
• applySUPG() : StabilizationSD< MeshType, DofType >
• applyTranspose() : BlockOperator , FSIApplyOperator , NavierStokesOperator
• applyViscoelasticBC() : OneDFSIBC , OneDFSIBCHandler
• ApproximatedInvertibleRowMatrix() : ApproximatedInvertibleRowMatrix
• approximateInverse() : RBFInterpolation< mesh_Type >
• area() : NavierStokesSolverBlocks , OseenSolver< MeshType, SolverType >
• area0() : OneDFSIData
• areaCap() : IonicFox
• argument() : ExpressionFunctor1< FunctorType, ArgumentType >
• argument1() : ExpressionFunctor2< FunctorType, ArgumentType1, ArgumentType2 >
• argument2() : ExpressionFunctor2< FunctorType, ArgumentType1, ArgumentType2 >
• argument_contains() : GetPot
• ArraySimple() : ArraySimple< DataType >
• aSIMPLEOperator() : aSIMPLEOperator
• assemble_constant_terms() : FastAssemblerNS
• assemble_matrices() : LinearElasticity
• assemble_NS_block01() : FastAssemblerMixed
• assemble_NS_block10() : FastAssemblerMixed
• assemble_SUPG_block00() : FastAssembler
• assemble_SUPG_block01() : FastAssemblerMixed
• assemble_SUPG_block10() : FastAssemblerMixed
• assemble_SUPG_block11() : FastAssembler
• assemble_supg_terms() : FastAssemblerNS
• assembleConvective() : FastAssembler , FastAssemblerNS
• assembleCoupling() : FSIHandler
• assembleFluidBlock() : FSIMonolithic
• assembleGradGrad_scalar() : FastAssembler
• assembleGradGrad_vectorial() : FastAssembler
• assembleInterfaceMass() : NavierStokesSolverBlocks
• assembleJacobianMatrix() : MultiscaleAlgorithmBroyden , MultiscaleAlgorithmNewton
• assembleLaplacianPhiILaplacianPhiJ_vectorial() : FastAssembler
• assembleMass_scalar() : FastAssembler
• assembleMass_vectorial() : FastAssembler
• assembleMeshBlock() : FSIMonolithicGI
• assembleSolidBlock() : FSIMonolithic
• assembleStructureInterfaceMass() : FSIHandler
• assembleSystem() : AssemblyPolicyGeneralizedStokes< mesh_Type > , AssemblyPolicyNavierStokesNewton< mesh_Type > , AssemblyPolicyNavierStokesPicard< mesh_Type > , AssemblyPolicyNavierStokesSemiImplicit< mesh_Type > , AssemblyPolicyStokes< mesh_Type >
• AssemblyPolicyGeneralizedStokes() : AssemblyPolicyGeneralizedStokes< mesh_Type >
• Assert() : Assert
• AssertContext() : AssertContext
• assertInitializer() : assertInitializer
• assignFunction() : BCInterfaceFunction< BcHandlerType, PhysicalSolverType > , BCInterfaceFunctionParser< BcHandlerType, PhysicalSolverType > , BCInterfaceFunctionSolverDefined< BcHandlerType, PhysicalSolverType > , BCInterfaceFunctionSolverDefined< BCHandler, FSIOperator > , BCInterfaceFunctionSolverDefined< BCHandler, StructuralOperator< RegionMesh< LinearTetra > > > , BCInterfaceFunctionSolverDefined< OneDFSIBCHandler, OneDFSISolver > , BCInterfaceFunctionUserDefined< BcHandlerType, PhysicalSolverType >
• assignRegionFlags() : MeshVolumeSubdivision< MeshType >
• assignVariableIndex() : ZeroDimensionalElementPassiveInductor , ZeroDimensionalNodeUnknown
• assignVaribleIndex() : ZeroDimensionalData
• attach() : DebugStream
• attachUnpartitionedMesh() : MeshPartitioner< MeshType >
• average() : PostProcessingBoundary< MeshType >
• aX() : IonicLuoRudyI
• axr1() : IonicTenTusscher06
• axr2() : IonicTenTusscher06
• Axs() : IonicTenTusscher06
• AztecooOperator() : AztecooOperator
• AztecooOperatorAlgebra() : AztecooOperatorAlgebra
• aztecStatus() : SolverAztecOO