Heart Class Reference

#include <heart.hpp>

Collaboration diagram for Heart:

Private Attributes
UInt	ion_model
UInt	nbeq
std::shared_ptr< HeartFunctors >	M_heart_fct

Typedefs
typedef HeartMonodomainSolver< RegionMesh< LinearTetra > >::vector_Type	vector_Type
typedef HeartMonodomainSolver< RegionMesh< LinearTetra > >::matrix_Type	matrix_Type
typedef std::shared_ptr< vector_Type >	vectorPtr_Type
typedef std::shared_ptr< matrix_Type >	matrixPtr_Type

Constructors, destructor
	Heart (Int argc, char **argv)
	Constructors. More...
virtual	~Heart ()

Methods
void	run ()
	To build the system and iterate. More...
void	computeRhs (vector_Type &rhs, HeartMonodomainSolver< RegionMesh< LinearTetra > > &electricModel, std::shared_ptr< HeartIonicSolver< RegionMesh< LinearTetra > > > ionicModel, HeartMonodomainData &dataMonodomain)
	To compute the righthand side of the system. More...

Detailed Description

3D Action potential propagation class

Definition at line 67 of file heart.hpp.

Member Typedef Documentation

vector_Type

typedef HeartMonodomainSolver< RegionMesh<LinearTetra> >::vector_Type vector_Type

Definition at line 75 of file heart.hpp.

matrix_Type

typedef HeartMonodomainSolver<RegionMesh<LinearTetra> >::matrix_Type matrix_Type

Definition at line 76 of file heart.hpp.

vectorPtr_Type

typedef std::shared_ptr<vector_Type> vectorPtr_Type

Definition at line 81 of file heart.hpp.

matrixPtr_Type

typedef std::shared_ptr<matrix_Type> matrixPtr_Type

Definition at line 82 of file heart.hpp.

Constructor & Destructor Documentation

Heart()

Heart	(	Int	argc,
		char **	argv
	)

Constructors.

Pointer to access functors

Definition at line 70 of file heart.cpp.

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~Heart()

virtual ~Heart ( )

inlinevirtual

Definition at line 92 of file heart.hpp.

Member Function Documentation

run()

void run

(

)

To build the system and iterate.

Methods.

Construction of data classes

Boundary conditions handler and function

Construction of the partitioned mesh

Initialization of the FE type and quadrature rules for both the variables

Construction of the FE spaces

Building time-independent part of the system

Initialization

Setting generic Exporter postprocessing

Temporal loop

Definition at line 94 of file heart.cpp.

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computeRhs()

void computeRhs	(	vector_Type &	rhs,
		HeartMonodomainSolver< RegionMesh< LinearTetra > > &	electricModel,
		std::shared_ptr< HeartIonicSolver< RegionMesh< LinearTetra > > >	ionicModel,
		HeartMonodomainData &	dataMonodomain
	)

To compute the righthand side of the system.

u, w with repeated map

Filling local elvec_u with potential values in the nodes

Computing the current source of the righthand side, repeated

Assembling the righthand side

Definition at line 426 of file heart.cpp.

Field Documentation

ion_model

UInt ion_model

private

Definition at line 119 of file heart.hpp.

nbeq

UInt nbeq

private

Definition at line 120 of file heart.hpp.

M_heart_fct

std::shared_ptr<HeartFunctors> M_heart_fct

private

Definition at line 121 of file heart.hpp.

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The documentation for this class was generated from the following files:

• heart.hpp
• heart.cpp